ExtractMotifs package - R script designed to analyse data in a bind-n-seq strategy

Dataset

Description

R script designed to analyse data in a bind-n-seq strategy:


This R package has been designed as a companion for the analysis of MERMADE (available at http://korflab.ucdavis.edu/datasets/BindNSeq/) software results in an improved Bind-n-seq strategy published in "An improved bind-n-seq strategy to determine protein-DNA interactions validated using the bacterial transcriptional regulator YipR" (Shi-qi et al 2020 )

It requires the installation of other R packages available from CRAN ("Plyr", "stringi", "htmltab","stringr" and "devtools") and from Bioconductor ("Biostrings", "DECIPHER")

To install this R package use the following commands:

install.packages("PathTo/ExtractMotifs_0.1.0.tar.gz",repos = NULL, type="source")
Date made availableMar 2020
PublisherQueen's University Belfast
Date of data production2019

Cite this

An, S. (Contributor), Valvano, M. A. (Contributor), Yu, Y. (Contributor), Webb, J. S. (Contributor), Lopez Campos, G. (Creator) (Mar 2020). ExtractMotifs package - R script designed to analyse data in a bind-n-seq strategy. Queen's University Belfast. 10.6084/m9.figshare.8058236