ExtractMotifs package - R script designed to analyse data in a bind-n-seq strategy

Dataset

Description

R script designed to analyse data in a bind-n-seq strategy:


This R package has been designed as a companion for the analysis of MERMADE (available at http://korflab.ucdavis.edu/datasets/BindNSeq/) software results in an improved Bind-n-seq strategy published in "An improved bind-n-seq strategy to determine protein-DNA interactions validated using the bacterial transcriptional regulator YipR" (Shi-qi et al 2020 )

It requires the installation of other R packages available from CRAN ("Plyr", "stringi", "htmltab","stringr" and "devtools") and from Bioconductor ("Biostrings", "DECIPHER")

To install this R package use the following commands:

install.packages("PathTo/ExtractMotifs_0.1.0.tar.gz",repos = NULL, type="source")
Date made availableMar 2020
PublisherQueen's University Belfast
Date of data production2019

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