Supplementary files for "Identification and characterisation of antimicrobial peptides in parasitic helminths"

PhD thesis supplementary Excel files.
Files provided in xlsx and CSV formats.
Please contact [email protected] for any issues regarding access to files.

Supplementary File 1:
SF1, Table 1: AMP query sequences used for construction of AMP group HMMs.
SF1, Table 2: Genomic and transcriptomic datasets used in the study. All files were retrieved from Wormbase Parasite version 14.
SF1, Table 3: AMP gene IDs identified from 134 nematode predicted protein datasets.
SF1, Table 4: Number and relative abundance of putative AMP genes identified in this study.

Supplementary File 2:
SF2, Table 1: Lophotrochozoan-derived AMPs identified in literature search
SF2, Table 2: Genomic and transcriptomic datasets utilised in the study. All files were retrieved from Wormbase Parasite version 14.
SF2, Table 3: HMM query sequences used to build antimicrobial saposin profile
SF2, Table 4: Flatworm Gene ID for Histone, Ubiquitin, B-Thymosin, Troponin and Filamin protein homologs. All gene IDs are from Wormbase Parasite version 14
SF2, Table 5: Identified putative antimicrobial SAPosin-Like Protein (SAPLIP) genes from flatworms

Supplementary File 3:
SF3, Table 1: Genomic datasets utilised in the study. All files were retrieved from Wormbase Parasite version 12.
SF3, Table 2: Nematode AMP-LPs
SF3, Table 3: Flatworm AMP-LPs

Supplementary File 4:
SF4, Table 1: Cecropin gene complement in eight Ascarididoidea species.

Supplementary File 5:
SF5, Table 1: Genomic and transcriptomic datasets utilised in the study.
SF5, Table 2: Macin gene complement in 28 nematode species.

Dataset files are embargoed until 31 July 2024 in line with thesis embargo.