Projects per year
Personal profile
Research Interests
Bioinformatics, Genetics, Epigenetics, Genomics, Transcriptomics, DNA Methylation, Kidney Disease, Rare Disease, Healthy Ageing, Chronic Diseases, Registries, Renal
Research Statement
My research is focused on molecular factors that influence human disease, in particular multiomic associations with kidney disease, diseases common in ageing populations, and rare diseases. We are keen to help prevent diseases, enable earlier detection, slow progression, and enable access to appropriate therapies where possible. We have a particular interest combining molecular data (genetics, epigenetics, and transcriptomics) with people's demographic and clinical data, exploring how social and environmental features affect a person's underlying biological risk of disease.
Data is derived from individuals recruited as part of multi-centre collections and we participate in multiple mega-consortia projects, including developing and evaluating approaches for data integration from diverse sources. DNA-Seq, RNA-seq and Long Read sequencing for rare and complex disorders, plus bacterial whole genome sequencing are performed. We are building the NICOLA (https://www.qub.ac.uk/sites/NICOLA/) bioresource, including multi-omic datasets with a focus on older individuals living in NI. We helped implement whole genome sequencing for individuals living with rare diseases as part of the NI Genomic Medicine Centre, increasing diagnoses by >30%, with the complementary development of an online information hub and patient-centred pathways. Our rare disease research informed the development of the NI rare disease implementation plan (2015) and action plan (2022). I co-lead two working groups helping deliver the actions noted in our rare disease action plan, with a focus on an information hub, patient portal, registry and care pathways. We hold several registries, are actively engaged in making maximal use of complex genomic information, and co-lead the LifeArc Centre for the Acceleration of Rare Disease Trials.
Teaching
I decreased my extensive teaching commitment in 2021, having developed and co-ordinated six new modules, as well as several new postgraduate courses, and participating in standard setting, exam boards, progress reviews, and postgraduate research boards. I have contributed to the curriculum revision of both undergraduate medicine and biomedical sciences degrees across all teaching years.
- Mentoring, Personal and Professional Development Portfolios (2006-present)
- MED1028 Foundations for Practice: Lecture (2020-present)
- MSK2 Public Health Genetics: Lecture (2021-present)
- SCM8102 Genetics for Public Health: Lecture (2020-present)
- TPU3008 Integrated Pharmacology: Lecture (2013-present)
- SCM7044/7025/8098 Medical Statistics: Lecture (2013-present)
- Preparation for Practice for final year medical students: Lecture (2013-present)
- Postgraduate taught modules within SMDBS: coordinate and lecture (2022-)
Previous commitments:
- BMS2103 Cell Biology and Clinical Genetics: I co-developed the genetic component of this year 2 biomedical science module, which was brand new for 2017-2018, co-coordinated the module, and Lecture. Our BSc (Hons) in Biomedical Science Programme has been accredited by the Institute of Biomedical Science (IBMS) for a further five years to 2022 (2018-2020)
- MED1023 Principles of Disease and Treatment, formerly known as MED1013 /MED 1014 Genes, Molecules and Processes Foundations of Clinical Practice 1: Lectures and Tutorials. I co-developed the genetic component of this module (three times) (2006-2020)
- MED1015: Systems, People and Populations Foundations of Clinical Practice 3; Lecture
- MED1020 Concepts in People and Populations: Lecture (2013-2020)
- MED1021 Student Selected Component: Lectures (2013-2020)
- SCM7048: Genomics and Genetics: Designed, Module Coordinator and Lecture
- SCM7052: Genomics, Cell Biology and Human Disease: Designed, Module Coordinator and Lecture
- SCM8095: Genomics and Human Disease: Designed, Module Coordinator and Lecture. This module has run across the MRes in Translational Medicine and MSc in Bioinformatics and Computational Biology, which has been shortlisted for the gradireland Higher Education Awards as Postgraduate Course of the Year in Computer Science & Technology and Postgraduate Course of the Year in Science. (2015-2020)
- SCM8056 Postgraduate Research Induction, Minimising Plagiarism, Differentiation: Co-designed and Lecture (2015-2020)
- SCM8094 Postgraduate Research Management (2018-2020)
- SCM8101 Postgraduate Education Forum (2015-2020)
I was the director of postgraduate education and training for the Centre of Public Health, QUB from 2012-2022 when I was appointed as Director of Postgraduate Research for the School of Medicine, Dentistry and Biomedical Sciences.
Expertise related to UN Sustainable Development Goals
In 2015, UN member states agreed to 17 global Sustainable Development Goals (SDGs) to end poverty, protect the planet and ensure prosperity for all. This person’s work contributes towards the following SDG(s):
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Collaborations and top research areas from the last five years
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R4015CPH: Social Circumstances and Epigenomics Promoting Health in Three Countries
McKnight, A. J. (PI), Cruise, S. (CoI), Kee, F. (CoI) & McGuinness, B. (CoI)
06/11/2020 → …
Project: Research
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R1351CPH: SPACE: Supportive environments for Physical and social Activity, healthy ageing and CognitivE health
Hunter, R. (PI), Duong, T. Q. (CoI), Ellis, G. (CoI), Garcia, L. (CoI), Kee, F. (CoI), McGuinness, B. (CoI), McKinley, J. (CoI), McKnight, A. J. (CoI) & O'Reilly, D. (CoI)
23/02/2021 → 29/02/2024
Project: Research
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R2004CPH: Developing a Northern Ireland register for inherited cardiac conditions with an epidemiological description of national population data
McKnight, A. J. (PI) & McKeown, P. (CoI)
03/04/2023 → …
Project: Research
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R1864CPH: Co-developing an Online Rare Disease Carer Support Tool in Northern Ireland (RD-CaST-NI)
Lohfeld, L. (PI), Dickey, H. (CoI), McKnight, A. J. (CoI) & Santin, O. (CoI)
20/02/2023 → …
Project: Research
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Rare Diseases Research Landscape project report
Bainbridge, K., Rare Disease Research Landscape Steering Group & McKnight, A. J., 21 Sept 2023, UK Medical Research Council. 84 p. (NIHR Open Research)Research output: Book/Report › Commissioned report
Open AccessFile44 Downloads (Pure) -
Ethics and genomics healthcare and research: building connections and sharing best practice: summary report
McKnight, A. J., 27 Jul 2023, Nuffield Council on Bioethics. 13 p.Research output: Book/Report › Other report
Open Access -
Epigenome-wide meta-analysis identifies DNA methylation biomarkers associated with diabetic kidney disease
Smyth, L. J., Dahlström, E. H., Syreeni, A., Kerr, K., Kilner, J., Doyle, R., Brennan, E., Nair, V., Fermin, D., Nelson, R. G., Looker, H. C., Wooster, C., Andrews, D., Anderson, K., McKay, G. J., Cole, J. B., Salem, R. M., Conlon, P. J., Kretzler, M. & Hirschhorn, J. N. & 9 others, , 22 Dec 2022, In: Nature Communications. 13, 16 p., 7891.Research output: Contribution to journal › Article › peer-review
Open AccessFile13 Citations (Scopus)90 Downloads (Pure) -
A Formative Study of the Implementation of Whole Genome Sequencing in Northern Ireland
Kerr, K., McKenna, C., Heggarty, S., Bailie, C., McMullan, J., Crowe, A., Kilner, J., Donnelly, M., Boyle, S., Rea, G., Flanagan, C., McKee, S. & McKnight, A. J., 21 Jun 2022, In: Genes. 13, 7, 1104.Research output: Contribution to journal › Article › peer-review
Open AccessFile1 Citation (Scopus)152 Downloads (Pure) -
Harnessing the Full Potential of Multi-Omic Analyses to Advance the Study and Treatment of Chronic Kidney Disease
Hill, C., Avila-Palencia, I., Maxwell, A. P., Hunter, R. F. & McKnight, A. J., 27 Jun 2022, In: Frontiers in Nephrology . 2, 923068.Research output: Contribution to journal › Review article › peer-review
Open AccessFile108 Downloads (Pure)
Datasets
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JDRF Diabetic Nephropathy Collaborative Research Initiative GWAS in the T2D Knowledge Portal
McKnight, A. J. (Creator), Queen's University Belfast, Dec 2018
DOI: 10.17034/0bb13952-988a-46ae-a5f4-b76f78f6f6ba, http://type2diabetesgen-qasrvr.elasticbeanstalk.com/informational/data
Dataset
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GEnetics of Nephropathy - an International Effort (GENIE) GWAS of Diabetic Nephropathy in the UK GoKinD and All-Ireland Cohorts
Maxwell, A. (Creator) & McKnight, A. (Creator), The National Center for Biotechnology Information, Nov 2011
http://www.ncbi.nlm.nih.gov/projects/gap/cgi-bin/study.cgi?study_id=phs000389.v1.p1
Dataset
Prizes
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Albert Nelson Marquis Lifetime Achievement Award
McKnight, A. J. (Recipient), 2019
Prize: Prize (including medals and awards)
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Expert in diabetic nephropathy
McKnight, A. J. (Recipient), 30 Dec 2018
Prize: Prize (including medals and awards)
Activities
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Member of the Life and Health Sciences Committee multidisciplinary committee of the Royal Irish Academy for the June 2022-2026 term
McKnight, A. J. (Member)
Jun 2022 → May 2026Activity: Consultancy types › Work on advisory panel to industry or government or non-government organisation
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Codeveloping the NI rare disease action plan & supporting North-South collaborations
McKnight, A. J. (Invited speaker)
08 Jun 2022Activity: Talk or presentation types › Invited talk
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The Future of Kidney Research is STEAM Powered - Public Engagement Event
Hill, C. (Organiser), Kerr, K. (Organiser), Smyth, L. (Organiser), Wilson, A. (Organiser), McKnight, A. J. (Organiser), Noble, H. (Organiser), Carswell, C. (Speaker) & Maxwell, P. (Speaker)
20 Feb 2022Activity: Other activity types › Other
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Invited Member of UK – International Mirror and Action Group for RD Research (RD-IMAG)
McKnight, A. J. (Member)
01 Jul 2022 → …Activity: Consultancy types › Work on advisory panel to industry or government or non-government organisation
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Invited Member of the Expert Group for the Rare Diseases Research Landscape project led by the DHSC, NIHR, and MRC.
McKnight, A. J. (Member)
01 May 2022 → …Activity: Consultancy types › Work on advisory panel to industry or government or non-government organisation
Press/Media
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Rare disease plan and investment welcomed - Ards peninsula woman leads scheme
05/11/2015
1 Media contribution
Press/Media: Public Engagement Activities
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How Covid-19 rocked rare disease communities
22/11/2021
1 Media contribution
Press/Media: Expert Comment