Ben Collins

Research output

Research output per year 2007 2015 2017 2021 2023

• 46 Article
• 4 Chapter
• 2 Other contribution
• 1 Editorial
• 1 More
  • 1 Letter

Research output per year

Research output per year

Search results

• 2023

  A gas phase fractionation acquisition scheme integrating ion mobility for rapid diaPASEF library generation

  Penny, J., Arefian, M., Schroeder, G. N., Bengoechea, J. A. & Collins, B. C., 10 Mar 2023, (Early online date) In: Proteomics. 8 p., 2200038.

  Research output: Contribution to journal › Article › peer-review

  Open Access

  File

  • Generation 100%
  • Ion Mobility 83%
  • Representative Sample 33%
  26 Downloads (Pure)

• Rapid profiling of protein complex reorganization in perturbed systems

  Bludau, I., Nicod, C., Martelli, C., Xue, P., Heusel, M., Fossati, A., Uliana, F., Frommelt, F., Aebersold, R. & Collins, B. C., 05 May 2023, In: Journal of Proteome Research. 22, 5, p. 1520-1536 17 p.

  Research output: Contribution to journal › Article › peer-review

  Open Access

  File

  • Protein 100%
  • Protein Complexes 100%
  • Biological Product 80%
  • Macrophage 60%
  • Stimulation 40%
  33 Downloads (Pure)
• 2021

  Diagnostics and correction of batch effects in large‐scale proteomic studies: a tutorial

  Čuklina, J., Lee, C. H., Williams, E. G., Sajic, T., Collins, B. C., Martínez, M. R., Sharma, V. S., Wendt, F., Goetze, S., Keele, G. R., Wollscheid, B., Aebersold, R. & Pedrioli, P. G. A., 25 Aug 2021, In: Molecular systems biology. 17, 8, 17 p., e10240.

  Research output: Contribution to journal › Article › peer-review

  Open Access

  File

  • Proteomics 100%
  • Sample 42%
  • Experiment 14%
  • Extraction 14%
  • Solution and Solubility 14%
  405 Downloads (Pure)

• Expression Dysregulation as a Mediator of Fitness Costs in Antibiotic Resistance

  Trauner, A., Banaei-Esfahani, A., Gygli, S. M., Warmer, P., Feldmann, J., Zampieri, M., Borrell, S., Collins, B. C., Beisel, C., Aebersold, R. & Gagneux, S., Sep 2021, In: Antimicrobial Agents and Chemotherapy. 65, 9, 18 p., e00504-21.

  Research output: Contribution to journal › Article › peer-review

  Open Access

  File

  • Antibiotic Resistance 100%
  • Fitness 80%
  • Mutation 80%
  • Gene Expression 60%
  • Epistasis 20%
  28 Downloads (Pure)

• From coarse to fine: the absolute Escherichia coli proteome under diverse growth conditions

  Mori, M., Zhang, Z., Banaei‐Esfahani, A., Lalanne, JB., Okano, H., Collins, B. C., Schmidt, A., Schubert, O. T., Lee, DS., Li, GW., Aebersold, R., Hwa, T. & Ludwig, C., 01 May 2021, In: Molecular systems biology. 17, 5, e9536.

  Research output: Contribution to journal › Article › peer-review

  Open Access

  File

  • Protein 100%
  • Escherichia coli 37%
  • Proteome 37%
  • Growth 25%
  • Biofilm 12%
  2 Citations (Scopus)

  82 Downloads (Pure)

• Multilayered regulation of autophagy by the Atg1 kinase orchestrates spatial and temporal control of autophagosome formation

  Schreiber, A., Collins, B. C., Davis, C., Enchev, R. I., Sedra, A., D'Antuono, R., Aebersold, R. & Peter, M., 16 Dec 2021, In: Molecular Cell. 81, 24, p. 5066-5081.e10

  Research output: Contribution to journal › Article › peer-review

  Open Access

  File

  • Atg1 100%
  72 Downloads (Pure)

• Systematic detection of functional proteoform groups from bottom-up proteomic datasets

  Bludau, I., Frank, M., Dörig, C., Cai, Y., Heusel, M., Rosenberger, G., Picotti, P., Collins, B. C., Röst, H. & Aebersold, R., 21 Jun 2021, In: Nature Communications. 12, 3810.

  Research output: Contribution to journal › Article › peer-review

  Open Access

  File

  • Bottom-up Proteomics 100%
  • Peptide 75%
  • Taxonomy 75%
  • Coding 50%
  • Protein 50%
  40 Downloads (Pure)

• The Protein Landscape of Chronic Lymphocytic Leukemia (CLL)

  Meier-Abt, F., Lu, J., Cannizzaro, E., Pohly, M. F., Kummer, S., Pfammatter, S., Kunz, L., Collins, B. C., Nadeu, F., Lee, K. S., Xue, P., Gwerder, M., Roiss, M., Hüllein, J., Scheinost, S., Dietrich, S., Campo, E., Huber, W., Aebersold, R. & Zenz, T., 29 Jun 2021, (Early online date) In: Blood.

  Research output: Contribution to journal › Article › peer-review

  Open Access

  File

  • Trisomy 100%
  • Protein 85%
  • Protein Expression 57%
  • IGHV@ 42%
  • Proteome 28%
  148 Downloads (Pure)
• 2020

  A Global Screen for Assembly State Changes of the Mitotic Proteome by SEC-SWATH-MS

  Heusel, M., Frank, M., Köhler, M., Amon, S., Frommelt, F., Rosenberger, G., Bludau, I., Aulakh, S., Linder, M. I., Liu, Y., Collins, B. C., Gstaiger, M., Kutay, U. & Aebersold, R., 05 Feb 2020, In: Cell systems. 10, 2, p. 133-155.e6 23 p.

  Research output: Contribution to journal › Article › peer-review

  Open Access

  File

  • Proteome 100%
  • Protein 100%
  • Mitosis 50%
  • Taxonomy 50%
  • Interphase 50%
  16 Citations (Scopus)

  34 Downloads (Pure)

• Complex-centric proteome profiling by SEC-SWATH-MS for the parallel detection of hundreds of protein complexes

  Bludau, I., Heusel, M., Frank, M., Rosenberger, G., Hafen, R., Banaei-Esfahani, A., Drogen, A. V., Collins, B. C., Gstaiger, M. & Aebersold, R., 20 Jul 2020, (Early online date) In: Nature Protocols.

  Research output: Contribution to journal › Article › peer-review

  Open Access

  File
  13 Citations (Scopus)

  252 Downloads (Pure)

• diaPASEF: parallel accumulation–serial fragmentation combined with data-independent acquisition

  Meier, F., Brunner, A-D., Frank, M., Ha, A., Bludau, I., Voytik, E., Kaspar-Schoenefeld, S., Lubeck, M., Raether, O., Bache, N., Aebersold, R., Collins, B. C., Röst, H. L. & Mann, M., 01 Dec 2020, In: Nature Methods. 17, p. 1229-1236

  Research output: Contribution to journal › Article › peer-review

  Open Access

  File

  • Sample 100%
  • Precursor 100%
  • Proteome 66%
  • Data Extraction 33%
  • Organisms 33%
  28 Citations (Scopus)

  1173 Downloads (Pure)

• SECAT: Quantifying Protein Complex Dynamics across Cell States by Network-Centric Analysis of SEC-SWATH-MS Profiles

  Rosenberger, G., Heusel, M., Bludau, I., Collins, B. C., Martelli, C., Williams, E. G., Xue, P., Liu, Y., Aebersold, R. & Califano, A., 16 Dec 2020, In: Cell systems. 11, 6, p. 589-607.e8

  Research output: Contribution to journal › Article › peer-review

  Open Access

  File

  • Protein Complexes 100%
  • Size-Exclusion Chromatography 75%
  • Fractionation 50%
  • Dynamics 50%
  • Sample 25%
  6 Citations (Scopus)

  46 Downloads (Pure)
• 2019

  Comparative analysis of mRNA and protein degradation in prostate tissues indicates high stability of proteins

  Shao, W., Guo, T., Toussaint, N. C., Xue, P., Wagner, U., Li, L., Charmpi, K., Zhu, Y., Wu, J., Buljan, M., Sun, R., Rutishauser, D., Hermanns, T., Fankhauser, C. D., Poyet, C., Ljubicic, J., Rupp, N., Rüschoff, J. H., Zhong, Q., Beyer, A., & 6 othersJi, J., Collins, B. C., Liu, Y., Rätsch, G., Wild, P. J. & Aebersold, R., 07 Jun 2019, In: Nature Communications. 10, 1

  Research output: Contribution to journal › Article › peer-review

  Open Access

  File

  • Protein Catabolism 100%
  • Sample 75%
  • Protein 25%
  • Degradation 25%
  • Proteome 25%
  13 Citations (Scopus)

  147 Downloads (Pure)

• Complex‐centric proteome profiling by SEC ‐ SWATH ‐ MS

  Heusel, M., Bludau, I., Rosenberger, G., Hafen, R., Frank, M., Banaei‐Esfahani, A., Drogen, A., Collins, B. C., Gstaiger, M. & Aebersold, R., 01 Jan 2019, In: Molecular systems biology.

  Research output: Contribution to journal › Article › peer-review

  Open Access

  File

  • Protein Subunit 100%
  43 Citations (Scopus)

  258 Downloads (Pure)

• Glycoproteomic Analysis of Prostate Cancer Tissues by SWATH Mass Spectrometry Discovers N-acylethanolamine Acid Amidase and Protein Tyrosine Kinase 7 as Signatures for Tumor Aggressiveness

  Liu, Y., Chen, J., Sethi, A., Li, Q. K., Chen, L., Collins, B., Gillet, L. C. J., Wollscheid, B., Zhang, H. & Aebersold, R., 01 Jul 2019, In: Molecular and Cellular Proteomics. 13, 7, p. 1753-1768 16 p.

  Research output: Contribution to journal › Article › peer-review

  Open Access

  File

  • N-Acylethanolamine 100%
  • Glycoproteomics 33%
  73 Citations (Scopus)

  93 Downloads (Pure)
• 2018

  AP-SWATH Reveals Direct Involvement of VCP/p97 in Integrated Stress Response Signaling Through Facilitating CReP/PPP1R15B Degradation

  Hülsmann, J., Kravic, B., Weith, M., Gstaiger, M., Aebersold, R., Collins, B. C. & Meyer, H., 01 Jul 2018, In: Molecular and Cellular Proteomics. p. 1295-1307 13 p.

  Research output: Contribution to journal › Article › peer-review

  Open Access

  File

  • P97 100%
  • Protein 62%
  • Degradation 50%
  • Stress 50%
  • Mass Spectrometry 37%
  13 Citations (Scopus)

  254 Downloads (Pure)

• Data‐independent acquisition‐based SWATH-MS for quantitative proteomics: a tutorial

  Ludwig, C., Gillet, L., Rosenberger, G., Amon, S., Collins, B. C. & Aebersold, R., Aug 2018, In: Molecular systems biology. 14, 23 p., e8126.

  Research output: Contribution to journal › Article › peer-review

  Open Access

  File

  • Peptide 100%
  • Sample 40%
  • Taxonomy 20%
  • Electric Potential 20%
  • Quantitative Proteomics 20%
  265 Citations (Scopus)

  397 Downloads (Pure)

• Proteomics goes parallel

  Collins, B. C. & Aebersold, R., Nov 2018, In: Nature Biotechnology. 36, 11

  Research output: Contribution to journal › Article › peer-review

  Open Access

  File
  9 Citations (Scopus)

  241 Downloads (Pure)
• 2017

  Delayed effects of transcriptional responses in Mycobacterium tuberculosis exposed to nitric oxide suggest other mechanisms involved in survival

  Cortes, T., Schubert, O. T., Banaei‐Esfahani, A., Collins, B., Aebersold, R. & Young, D. B., 15 Aug 2017, In: Scientific Reports. 8208.

  Research output: Contribution to journal › Article › peer-review

  Open Access

  File

  • Nitric Oxide 100%
  • Mycobacterium Tuberculosis 50%
  • Survival 50%
  • Stress 50%
  • Proteomics 50%
  19 Citations (Scopus)

  126 Downloads (Pure)

• Elucidation of host–pathogen protein–protein interactions to uncover mechanisms of host cell rewiring

  Nicod, C., Banaei‐Esfahani, A. & Collins, B., 01 Oct 2017, In: Current Opinion in Microbiology.

  Research output: Contribution to journal › Article › peer-review

  Open Access

  File

  • Infection 100%
  • Host 100%
  • Infectious Agent 75%
  • Protein 50%
  • Host Cell 50%
  28 Citations (Scopus)

  116 Downloads (Pure)

• Inference and quantification of peptidoforms in large sample cohorts by SWATH-MS

  Rosenberger, G., Liu, Y., Röst, H. L., Ludwig, C., Buil, A., Bensimon, A., Soste, M., Spector, T. D., Dermitzakis, E. T., Collins, B. C., Malmström, L. & Aebersold, R., 12 Jun 2017, In: Nature Biotechnology. 35, 8, p. nbt.3908

  Research output: Contribution to journal › Article › peer-review

  Open Access

  File

  • Sample 100%
  • Posttranslational Modification 100%
  • Mass Spectrometry 100%
  • Proteomics 100%
  63 Citations (Scopus)

  360 Downloads (Pure)

• In Vivo and in Vitro Proteome Analysis of Human Immunodeficiency Virus (HIV)-1-infected, Human CD4+ T Cells

  Nemeth, J., Vongrad, V., Metzner, K. J., Strouvelle, V. P., Weber, R., Pedrioli, P., Aebersold, R., Günthard, H. F. & Collins, B. C., 31 Mar 2017, In: Molecular and Cellular Proteomics. 16, 4 suppl 1, p. S108-S123

  Research output: Contribution to journal › Article › peer-review

  Open Access

  File

  • Human Immunodeficiency Virus 1 100%
  • T-Helper Cell 81%
  • Proteome 72%
  • Protein 45%
  • Time 18%
  15 Citations (Scopus)

  102 Downloads (Pure)

• Multi-laboratory assessment of reproducibility, qualitative and quantitative performance of SWATH-mass spectrometry

  Collins, B. C., Hunter, C. L., Liu, Y., Schilling, B., Rosenberger, G., Bader, S. L., Chan, D. W., Gibson, B. W., Gingras, A-C., Held, J. M., Hirayama-Kurogi, M., Hou, G., Krisp, C., Larsen, B., Lin, L., Liu, S., Molloy, M. P., Moritz, R. L., Ohtsuki, S., Schlapbach, R., & 5 othersSelevsek, N., Thomas, S. N., Tzeng, S-C., Zhang, H. & Aebersold, R., 21 Aug 2017, In: Nature Communications. 8, 1, 291.

  Research output: Contribution to journal › Article › peer-review

  Open Access

  File

  • Mass Spectrometry 100%
  • Protein 50%
  • Proteomics 25%
  • Data Analysis 25%
  • Quantitative Proteomics 25%
  199 Citations (Scopus)

  181 Downloads (Pure)

• Precise Temporal Profiling of Signaling Complexes in Primary Cells Using SWATH Mass Spectrometry

  Caron, E., Roncagalli, R., Hase, T., Wolski, W. E., Choi, M., Menoita, M. G., Durand, S., García-Blesa, A., Fierro-Monti, I., Sajic, T., Heusel, M., Weiss, T., Malissen, M., Schlapbach, R., Collins, B. C., Ghosh, S., Kitano, H., Aebersold, R., Malissen, B. & Gstaiger, M., 28 Mar 2017, (Early online date) In: Cell Reports. 18, 13, p. 3219-3226 8 p.

  Research output: Contribution to journal › Article › peer-review

  Open Access

  File

  • GRB2 100%
  21 Citations (Scopus)

  110 Downloads (Pure)

• Quantitative proteomics: challenges and opportunities in basic and applied research

  Schubert, O. T., Röst, H. L., Collins, B. C., Rosenberger, G. & Aebersold, R., 01 Jun 2017, In: Nature Protocols. 12, 7, p. 1289-1294 6 p.

  Research output: Contribution to journal › Article

  Open Access

  File

  • Quantitative Proteomics 100%
  • Proteomics 50%
  • Mass Spectrometry 50%
  • Clinical Research 50%
  • Development 50%
  102 Citations (Scopus)

  889 Downloads (Pure)

• Statistical control of peptide and protein error rates in large-scale targeted data-independent acquisition analyses

  Rosenberger, G., Bludau, I., Schmitt, U., Heusel, M., Hunter, C. L., Liu, Y., MacCoss, M. J., MacLean, B. X., Nesvizhskii, A., Pedrioli, P. GA., Reiter, L., Rost, H. L., Tate, S., Ting, Y. S., Collins, B. & Aebersold, R., 21 Aug 2017, In: Nature Methods. 14, 2017, p. 921

  Research output: Contribution to journal › Article › peer-review

  Open Access

  File

  • Peptide 100%
  • Protein 83%
  • Proteomics 33%
  • Liquid Chromatography 16%
  • Sample 16%
  84 Citations (Scopus)

  359 Downloads (Pure)

• Systems proteomics approaches to study bacterial pathogens: application to Mycobacterium tuberculosis

  Banaei‐Esfahani, A., Nicod, C., Aebersold, R. & Collins, B., 13 Oct 2017, In: Current Opinion in Microbiology.

  Research output: Contribution to journal › Article › peer-review

  Open Access

  File

  • Infectious Agent 100%
  • Pathogen 100%
  • Host 50%
  • Proteomics 50%
  • Biochemical Process 50%
  18 Citations (Scopus)

  115 Downloads (Pure)
• 2016

  Integrating highly quantitative proteomics and genome-scale metabolic modeling to study pH adaptation in the human pathogen Enterococcus faecalis

  Großeholz, R., Koh, C-C., Veith, N., Fiedler, T., Strauss, M., Olivier, B., Collins, B. C., Schubert, O. T., Bergmann, F., Kreikemeyer, B., Aebersold, R. & Kummer, U., 08 Sep 2016, In: npj Systems Biology and Applications. 2

  Research output: Contribution to journal › Article › peer-review

  Open Access

  File

  • Proteomics 100%
  • Protein 100%
  • Proteome 66%
  • Enterococcus faecalis 66%
  • pH 66%
  9 Citations (Scopus)

  135 Downloads (Pure)

• TRIC: an automated alignment strategy for reproducible protein quantification in targeted proteomics

  Röst, H. L., Liu, Y., D'Agostino, G., Zanella, M., Navarro, P., Rosenberger, G., Collins, B. C., Gillet, L., Testa, G., Malmström, L. & Aebersold, R., 01 Aug 2016, In: Nature Methods. 13, 9, p. 777-783 7 p.

  Research output: Contribution to journal › Article › peer-review

  Open Access

  File

  • Proteomics 100%
  • Spectroscopy 20%
  • Light 20%
  • Protein 20%
  • Liquid 20%
  89 Citations (Scopus)

  276 Downloads (Pure)
• 2015

  Absolute Proteome Composition and Dynamics during Dormancy and Resuscitation of Mycobacterium tuberculosis

  Schubert, O. T., Ludwig, C., Kogadeeva, M., Zimmermann, M., Rosenberger, G., Gengenbacher, M., Gillet, L. C., Collins, B. C., Röst, H. L., Kaufmann, S. H. E., Sauer, U. & Aebersold, R., 08 Jul 2015, In: Cell Host & Microbe. 18, 1, p. 96-108 13 p.

  Research output: Contribution to journal › Article › peer-review

  Open Access

  • Protein 100%
  • Dormancy 66%
  • Comprehension 33%
  • Mycobacterium Tuberculosis 33%
  • Proteome 33%
  131 Citations (Scopus)

• Assessment of a method to characterize antibody selectivity and specificity for use in immunoprecipitation

  Marcon, E., Jain, H., Bhattacharya, A., Guo, H., Phanse, S., Pu, S., Byram, G., Collins, B. C., Dowdell, E., Fenner, M., Guo, X., Hutchinson, A., Kennedy, J. J., Krastins, B., Larsen, B., Lin, Z-Y., Lopez, M. F., Loppnau, P., Miersch, S., Nguyen, T., & 24 othersOlsen, J. B., Paduch, M., Ravichandran, M., Seitova, A., Vadali, G., Vogelsang, M. S., Whiteaker, J. R., Zhong, G., Zhong, N., Zhao, L., Aebersold, R., Arrowsmith, C. H., Emili, A., Frappier, L., Gingras, A-C., Gstaiger, M., Paulovich, A. G., Koide, S., Kossiakoff, A. A., Sidhu, S. S., Wodak, S. J., Gräslund, S., Greenblatt, J. F. & Edwards, A. M., 29 Jun 2015, In: Nature Methods. 12, 8, p. 725-731 7 p.

  Research output: Contribution to journal › Article › peer-review

  • Antibody 100%
  • Protein 57%
  • Immunoprecipitation 42%
  • Protein Complexes 14%
  • Data Base 14%
  73 Citations (Scopus)

• Building high-quality assay libraries for targeted analysis of SWATH MS data

  Schubert, O. T., Gillet, L. C., Collins, B. C., Navarro, P., Rosenberger, G., Wolski, W. E., Lam, H., Amodei, D., Mallick, P., MacLean, B. & Aebersold, R., 12 Feb 2015, In: Nature Protocols. 10, 3, p. 426-441 16 p.

  Research output: Contribution to journal › Article › peer-review

  Open Access

  File

  • Reference Library 100%
  • Assertiveness 50%
  182 Citations (Scopus)

  663 Downloads (Pure)

• Identification of a Set of Conserved Eukaryotic Internal Retention Time Standards for Data-independent Acquisition Mass Spectrometry

  Parker, S. J., Rost, H., Rosenberger, G., Collins, B. C., Malmström, L., Amodei, D., Venkatraman, V., Raedschelders, K., Eyk, J. E. V. & Aebersold, R., 01 Oct 2015, In: Molecular and Cellular Proteomics. 14, 10, p. 2800-2813 14 p.

  Research output: Contribution to journal › Article › peer-review

  Open Access

  File

  • Retention Time 100%
  • Peptide 72%
  • Mass Spectrometry 16%
  • Cell Lysate 11%
  • Yeast 11%
  45 Citations (Scopus)

  74 Downloads (Pure)

• mapDIA: Preprocessing and statistical analysis of quantitative proteomics data from data independent acquisition mass spectrometry

  Teo, G., Kim, S., Tsou, C-C., Collins, B., Gingras, A-C., Nesvizhskii, A. I. & Choi, H., 03 Nov 2015, In: Journal of proteomics. 129, p. 108-120 13 p.

  Research output: Contribution to journal › Article › peer-review

  Open Access

  File

  • Peptide 100%
  • Protein 83%
  • Sample 50%
  • Mass Spectrometry 33%
  • Software 33%
  72 Citations (Scopus)

  247 Downloads (Pure)

• Quantitative variability of 342 plasma proteins in a human twin population

  Liu, Y., Buil, A., Collins, B. C., Gillet, L. CJ., Blum, L. C., Cheng, L-Y., Vitek, O., Mouritsen, J., Lachance, G., Spector, T. D., Dermitzakis, E. T. & Aebersold, R., 04 Feb 2015, In: Molecular systems biology. 11, 2, 19 p., 786.

  Research output: Contribution to journal › Article › peer-review

  Open Access

  File

  • Plasma Protein 100%
  • Protein 62%
  • Mass Spectrometry 37%
  • Dizygotic Twins 25%
  • Sample 25%
  184 Citations (Scopus)

  73 Downloads (Pure)

• Rapid mass spectrometric conversion of tissue biopsy samples into permanent quantitative digital proteome maps

  Guo, T., Kouvonen, P., Koh, C. C., Gillet, L. C., Wolski, W. E., Röst, H. L., Rosenberger, G., Collins, B. C., Blum, L. C., Gillessen, S., Joerger, M., Jochum, W. & Aebersold, R., 02 Mar 2015, In: Nature Medicine. 21, 4, p. 407-415 9 p.

  Research output: Contribution to journal › Article › peer-review

  Open Access

  File

  • Sample 100%
  • Proteome 66%
  • Protein 50%
  • Mass Spectrometry 50%
  • Pressure 16%
  209 Citations (Scopus)

  670 Downloads (Pure)
• 2014

  A repository of assays to quantify 10,000 human proteins by SWATH-MS

  Rosenberger, G., Koh, C. C., Guo, T., Röst, H. L., Kouvonen, P., Collins, B. C., Heusel, M., Liu, Y., Caron, E., Vichalkovski, A., Faini, M., Schubert, O. T., Faridi, P., Ebhardt, H. A., Matondo, M., Lam, H., Bader, S. L., Campbell, D. S., Deutsch, E. W., Moritz, R. L., & 2 othersTate, S. & Aebersold, R., 16 Sep 2014, In: Scientific Data. 1, 15 p., 140031.

  Research output: Contribution to journal › Article › peer-review

  Open Access

  File

  • Protein 100%
  • Mass Spectrometry 33%
  • Sample 33%
  • Data Analysis 16%
  • Proteome 16%
  216 Citations (Scopus)

  64 Downloads (Pure)
• 2013

  Mass spectrometric protein maps for biomarker discovery and clinical research

  Liu, Y., Hüttenhain, R., Collins, B. & Aebersold, R., 09 Jan 2013, In: Expert review of molecular diagnostics. 13, 8, p. 811-825 15 p.

  Research output: Contribution to journal › Article › peer-review

  Open Access

  File

  • Mass Spectrometry 100%
  • Biomarker Discovery 50%
  • Biomarker Study 25%
  • Clinical Research 25%
  • Molecule 25%
  89 Citations (Scopus)

  60 Downloads (Pure)

• Quantifying protein interaction dynamics by SWATH mass spectrometry: application to the 14-3-3 system

  Collins, B. C., Gillet, L. C., Rosenberger, G., Röst, H. L., Vichalkovski, A., Gstaiger, M. & Aebersold, R., Dec 2013, In: Nature Methods. 10, 12, p. 1246-1253 8 p.

  Research output: Contribution to journal › Article › peer-review

  Open Access

  File

  • Dynamics 100%
  • Mass Spectrometry 50%
  • Protein Complexes 50%
  • Protein Interaction 50%
  • Interactome 33%
  226 Citations (Scopus)

  356 Downloads (Pure)
• 2012

  Development of a Pharmaceutical Hepatotoxicity Biomarker Panel Using a Discovery to Targeted Proteomics Approach

  Collins, B. C., Miller, C. A., Sposny, A., Hewitt, P., Wells, M., Gallagher, W. M. & Pennington, S. R., 01 Aug 2012, In: Molecular and Cellular Proteomics. 11, 8, p. 394-410 17 p.

  Research output: Contribution to journal › Article › peer-review

  Open Access

  File

  • Proteomics 100%
  • Liquid Chromatography Mass Spectrometry 100%
  • Rat 75%
  • Protein 50%
  • Peptide 50%
  28 Citations (Scopus)

  80 Downloads (Pure)

• Focus on Cancer Proteomics 12'13

  Collins, B. C. & Gallagher, W. M., 17 Jul 2012, In: Proteomics. 12, 13, p. 2065-2066 2 p.

  Research output: Contribution to journal › Article

• Range of protein detection by selected/multiple reaction monitoring mass spectrometry in an unfractionated human cell culture lysate

  Ebhardt, H. A., Sabidó, E., Hüttenhain, R., Collins, B. & Aebersold, R., 2012, In: Proteomics. 12, 8, p. 1185-1193 9 p.

  Research output: Contribution to journal › Article › peer-review

  • Multiple Reaction Monitoring 100%
  • Protein 75%
  • Human Cell 62%
  • Extract 37%
  • Cell Lysate 25%
  34 Citations (Scopus)
• 2011

  Sequence Tagging Reveals Unexpected Modifications in Toxicoproteomics

  Dasari, S., Chambers, M. C., Codreanu, S. G., Liebler, D. C., Collins, B. C., Pennington, S. R., Gallagher, W. M. & Tabb, D. L., 07 Jan 2011, In: Chemical research in toxicology. 24, 2, p. 204-216 13 p.

  Research output: Contribution to journal › Article › peer-review

  Open Access

  File

  • Search Engine 100%
  22 Citations (Scopus)

  139 Downloads (Pure)

• Serum Proteomic Profiling Reveals That Pretreatment Complement Protein Levels are Predictive of Esophageal Cancer Patient Response to Neoadjuvant Chemoradiation

  Maher, S. G., McDowell, D. T., Collins, B. C., Muldoon, C. MRCP., Gallagher, W. M. & Reynolds, J. V., 2011, In: Annals of Surgery. 254, 5, p. 809-817 9 p.

  Research output: Contribution to journal › Article › peer-review

  • Serum 100%
  • Chemoradiotherapy 85%
  • Esophageal Cancer 57%
  • Biological Marker 57%
  • Tumor Regression 57%
  34 Citations (Scopus)
• 2010

  Use of SELDI MS to discover and identify potential biomarkers of toxicity in InnoMed PredTox: A multi-site, multi-compound study

  Collins, B. C., Sposny, A., McCarthy, D., Brandenburg, A., Woodbury, R., Pennington, S. R., Gautier, J-C., Hewitt, P. & Gallagher, W. M., 15 Apr 2010, In: Proteomics. 10, 8, p. 1592-1608 17 p.

  Research output: Contribution to journal › Article › peer-review

  Open Access

  File

  • Liver Protein 100%
  12 Citations (Scopus)

  182 Downloads (Pure)
• 2007

  Use of proteomics for the discovery of early markers of drug toxicity

  Collins, B. C., Clarke, A., Kitteringham, N. R., Gallagher, W. M. & Pennington, S. R., 19 Oct 2007, In: Expert Opinion on Drug Metabolism and Toxicology. 3, 5, p. 689-704 16 p.

  Research output: Contribution to journal › Article › peer-review

  • Toxicity 100%
  • Biological Marker 40%
  • Drug Development 40%
  • Drugs Toxicology 20%
  • Systems Toxicology 20%
  17 Citations (Scopus)