Research output per year
Research output per year
- 28 results
Search results
-
2024
Approaches for predicting dairy cattle methane emissions: from traditional methods to machine learning
Ross, S., Wang, H., Zheng, H., Yan, T. & Shirali, M., 10 Aug 2024, (Early online date) In: Journal of Animal Science. 102Research output: Contribution to journal › Article › peer-review
Open AccessFile2 Citations (Scopus) -
Competing endogenous RNAs (ceRNAs) and application of their regulatory networks in complex traits and diseases of ruminants
Ghafouri, F., Reyhan, V. D., Sadeghi, M., Miraei-Ashtiani, S. R., Kastelic, J. P., Barkema, H. W. & Shirali, M., Jun 2024, In: Ruminants. 4, 2, p. 165-181Research output: Contribution to journal › Article › peer-review
Open AccessFile17 Downloads (Pure) -
Integrated analysis of transcriptome profiles and lncRNA–miRNA–mRNA competing endogenous RNA regulatory network to identify biological functional effects of genes and pathways associated with Johne’s disease in dairy cattle
Ghafouri, F., Reyhan, V. D., Sadeghi, M., Miraei-Ashtiani, S. R., Kastelic, J. P., Barkema , H. W. & Shirali, M., Aug 2024, In: Non-Coding RNA. 10, 4, 22 p., 38.Research output: Contribution to journal › Article › peer-review
Open AccessFile15 Downloads (Pure) -
Plasticity comparison of two stem cell sources with different Hox gene expression profiles in response to cobalt chloride treatment during chondrogenic differentiation
Khajeh, S., Razban, V., Naeimzadeh, Y., Nadimi, E., Asadi-Golshan, R., Heidari, Z., Talaei-Khozani, T., Dehghani, F., Mostafavi-Pour, Z. & Shirali, M., Aug 2024, In: Biology. 13, 8, 17 p., 560.Research output: Contribution to journal › Article › peer-review
Open AccessFile1 Citation (Scopus)20 Downloads (Pure) -
Unveiling the genetic landscape of feed efficiency in Holstein dairy cows: insights into heritability, genetic markers, and pathways via meta-analysis
Jiang, W., Mooney, M. H. & Shirali, M., 13 Feb 2024, (Early online date) In: Journal of Animal Science . 102, 14 p., skae040.Research output: Contribution to journal › Article › peer-review
Open AccessFile2 Citations (Scopus)29 Downloads (Pure) -
2023
Bioinformatics analysis of differentially gene expression profiles related to heat stress in brain, liver, and leg muscle of broiler chickens based on microarray technique
Ekhtiyari, M. S., Javanmard, A., Ghafouri, F., Sadat Sadr, A., Miraei-Ashtiani, S. R. & Shirali, M., 23 Sept 2023, In: Iranian Journal of Animal Science. 54, 3, p. 203-223 21 p.Research output: Contribution to journal › Article › peer-review
Open AccessFile50 Downloads (Pure) -
Identification of hub genes and target miRNAs crucial for milk production in Holstein Friesian dairy cattle
Roudbari, Z., Mokhtari, M., Ebrahimpour Gorji, A., Sadkowski, T., Sadr, A. S. & Shirali, M., 20 Nov 2023, In: Genes. 14, 11, 12 p., 2105.Research output: Contribution to journal › Article › peer-review
Open AccessFile22 Downloads (Pure) -
In-silico characterization of a thermophilic serine protease via homology modeling, docking and molecular dynamics simulations
Jamal, G. A., Jahangirian, E., Hamblin, M. R., Shirali, M., Mirzaei, H. & Tarrahimofrad, H., 12 Dec 2023, (Early online date) In: Journal of Biomolecular Structure & Dynamics. 22 p.Research output: Contribution to journal › Article › peer-review
Open AccessFile4 Downloads (Pure) -
Integrated comparative transcriptome and circRNA-lncRNA-miRNA-mRNA ceRNA regulatory network analyses identify molecular mechanisms associated with intramuscular fat content in beef cattle
Reyhan, V. D., Ghafouri, F., Sadeghi, M., Miraei-Ashtiani, S. R., Kastelic, J. P., Barkema , H. W. & Shirali, M., 11 Aug 2023, In: Animals. 13, 16, 22 p., 2598.Research output: Contribution to journal › Article › peer-review
Open AccessFile10 Citations (Scopus)30 Downloads (Pure) -
2022
Behavioural traits in Bos taurus cattle, their heritability, potential genetic markers, and associations with production traits
Titterington, F. M., Knox, R., Morrison, S. J. & Shirali, M., Oct 2022, In: Animals. 12, 19, 2602.Research output: Contribution to journal › Article › peer-review
Open AccessFile6 Citations (Scopus)41 Downloads (Pure) -
De Novo transcriptome assembly and differential expression analysis of catharanthus roseus in response to salicylic acid
Soltani, N., Firouzabadi, F. N., Shafeinia, A., Shirali, M. & Sadr, A. S., 24 Oct 2022, In: Scientific Reports. 12, 12 p., 17803.Research output: Contribution to journal › Article › peer-review
Open Access9 Citations (Scopus) -
Human-animal interactions with bos taurus cattle and their impacts on on-farm safety: a systematic review
Titterington, F. M., Knox, R., Buijs, S., Lowe, D. E., Morrison, S. J., Lively, F. O. & Shirali, M., 19 Mar 2022, In: Animals. 12, 6, 776.Research output: Contribution to journal › Article › peer-review
Open AccessFile6 Citations (Scopus)53 Downloads (Pure) -
In silico methods for modeling of genomic regions for immunological and metabolic gene modulating to stress response in chicken: where we are?
Ekhtiyari, M. S., Sadr, A. S., Shirali, M. & Javanmard, A., 01 Sept 2022, In: Iranian Journal of Applied Animal Science. 12, 3, p. 415-432 18 p.Research output: Contribution to journal › Article › peer-review
Open AccessFile11 Downloads (Pure) -
Single Nucleotide Polymorphism Effects on Lamb Fecal Egg Count Estimated Breeding Values in Progeny-Tested Katahdin Sires
Notter, D. R., Heidaritabar, M., Burke, J. M., Shirali, M., Murdoch, B. M., Morgan, J. L. M., Morota, G., Sonstegard, T. S., Becker, G. M., Spangler, G. L., MacNeil, M. D. & Miller, J. E., 03 May 2022, (Early online date) In: Frontiers in Genetics. 13, 866176.Research output: Contribution to journal › Article › peer-review
Open AccessFile2 Citations (Scopus)104 Downloads (Pure) -
2021
Nontrivial Replication of Loci Detected by Multi-Trait Methods
Ning, Z., Tsepilov, Y. A., Sharapov, S. Z., Wang, Z., Grishenko, A. K., Feng, X., Shirali, M., Joshi, P. K., Wilson, J. F., Pawitan, Y., Haley, C. S., Aulchenko, Y. S. & Shen, X., 03 Feb 2021, In: Frontiers in Genetics. 12, 8 p., 627989.Research output: Contribution to journal › Article › peer-review
Open AccessFile4 Citations (Scopus)29 Downloads (Pure) -
2020
The expression of Terpenoid Indole Alkaloid (TIAs) pathway genes inCatharanthus roseusin response to salicylic acid treatment
Soltani, N., Nazarian Firouzabadi, F., Shafeinia, A., Sadr, A. S. & Shirali, M., Sept 2020, In: Molecular Biology Reports. 47, 9, p. 7009–7016Research output: Contribution to journal › Article › peer-review
Open AccessFile17 Citations (Scopus)261 Downloads (Pure) -
2019
Author Correction: Association analysis in over 329,000 individuals identifies 116 independent variants influencing neuroticism
Luciano, M., Hagenaars, S. P., Davies, G., Hill, W. D., Clarke, T.-K., Shirali, M., Harris, S. E., Marioni, R. E., Liewald, D. C., Fawns-Ritchie, C., Adams, M. J., Howard, D. M., Lewis, C. M., Gale, C. R., McIntosh, A. M. & Deary, I. J., 29 Jan 2019, In: Nature Genetics. 51, 577.Research output: Contribution to journal › Article › peer-review
2 Citations (Scopus) -
Genome-wide meta-analysis of depression identifies 102 independent variants and highlights the importance of the prefrontal brain regions
Howard, D. M., Adams, M. J., Clarke, T. K., Hafferty, J. D., Gibson, J., Shirali, M., Coleman, J. R. I., Hagenaars, S. P., Ward, J., Wigmore, E. M., Alloza, C., Shen, X., Barbu, M. C., Xu, E. Y., Whalley, H. C., Marioni, R. E., Porteous, D. J., Davies, G., Deary, I. J. & Hemani, G. & 18 others, , 04 Feb 2019, In: Nature Neuroscience. 22, 3, p. 343-352 10 p.Research output: Contribution to journal › Article › peer-review
1462 Citations (Scopus) -
Insulin resistance: Genetic associations with depression and cognition in population based cohorts
Frangou, S., Shirali, M., Adams, M. J., Howard, D. M., Gibson, J., Hall, L. S., Smith, B. H., Padmanabhan, S., Murray, A. D., Porteous, D. J., Haley, C. S., Deary, I. J., Clarke, T. K. & McIntosh, A. M., 01 Jun 2019, In: Experimental Neurology. 316, p. 20-26 7 p.Research output: Contribution to journal › Article › peer-review
Open AccessFile8 Citations (Scopus)65 Downloads (Pure) -
su76 exploring the relationship of birth weight on cortical brain structure in uk biobank using genetic instruments
Neilson, E., Clarke, T., Shen, X., Cox, S., Shirali, M., Howard, D., Gibson, J., Adams, M., Harris, M., Davies, G., Deary, I. J., Boardman, J., Lawrie, S., McIntosh, A. & Whalley, H., 26 Sept 2019, In: European Neuropsychopharmacology. 29, Supplement 4, p. S1307Research output: Contribution to journal › Article › peer-review
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2018
Addendum: Genome-wide association study of depression phenotypes in UK Biobank identifies variants in excitatory synaptic pathways
Howard, D. M., Adams, M. J., Shirali, M., Clarke, T.-K., Marioni, R. E., Davies, G., Coleman, J. R. I., Alloza, C., Shen, X., Barbu, M. C., Wigmore, E. M., Gibson, J., Hagenaars, S. P., Lewis, C. M., Ward, J., Smith, D. J., Sullivan, P. F., Haley, C. S., Breen, G. & Deary, I. J. & 1 others, , 30 Aug 2018, In: Nature Communications.Research output: Contribution to journal › Article › peer-review
Open AccessFile14 Citations (Scopus)15 Downloads (Pure) -
Genome-wide association study of depression phenotypes in UK Biobank identifies variants in excitatory synaptic pathways
Howard, D. M., Adams, M. J., Shirali, M., Clarke, T. K., Marioni, R. E., Davies, G., Coleman, J. R. I., Alloza, C., Shen, X., Barbu, M. C., Wigmore, E. M., Gibson, J., Hagenaars, S. P., Lewis, C. M., Ward, J., Smith, D. J., Sullivan, P. F., Haley, C. S., Breen, G. & Deary, I. J. & 1 others, , 01 Dec 2018, In: Nature Communications. 9, 1, 10 p.Research output: Contribution to journal › Article › peer-review
Open AccessFile375 Citations (Scopus)101 Downloads (Pure) -
Genome-wide pleiotropy and shared biological pathways for resistance to bovine pathogens
Mahmoud, M., Zeng, Y., Shirali, M., Yin, T., Brügemann, K., Konig, S. & Haley, C., 02 Apr 2018, In: PLoS ONE. 13, 4Research output: Contribution to journal › Article › peer-review
Open AccessFile4 Citations (Scopus)58 Downloads (Pure) -
Haplotype Heritability Mapping Method Uncovers Missing Heritability of Complex Traits
Shirali, M., Knott, S. A., Pong-Wong, R., Navarro, P. & Haley, C. S., 01 Dec 2018, In: Scientific Reports. 8, 1Research output: Contribution to journal › Article › peer-review
Open AccessFile12 Citations (Scopus)46 Downloads (Pure) -
2017
Association analysis in over 329,000 individuals identifies 116 independent variants influencing neuroticism
Luciano, M., Hagenaars, S. P., Davies, G., Hill, W. D., Clarke, T. K., Shirali, M., Harris, S. E., Marioni, R. E., Liewald, D. C., Fawns-Ritchie, C., Adams, M. J., Howard, D. M., Lewis, C. M., Gale, C. R., McIntosh, A. M. & Deary, I. J., 18 Dec 2017, In: Nature Genetics. 50, 1, p. 6-11Research output: Contribution to journal › Article › peer-review
229 Citations (Scopus) -
Genome-wide regional heritability mapping identifies a locus within the TOX2 gene associated with major depressive disorder
Zeng, Y., Navarro, P., Shirali, M., Howard, D. M., Adams, M. J., Hall, L. S., Clarke, T.-K., Thomson, P. A., Smith, B. H., Murray, A., Padmanabhan, S., Hayward, C., Boutin, T., MacIntyre, D. J., Lewis, C. M., Wray, N. R., Mehta, D., Penninx, B. W. J. H., Milaneschi, Y. & Baune, B. T. & 19 others, , Sept 2017, In: Biological Psychiatry. 82, 5, p. 312-321Research output: Contribution to journal › Article › peer-review
Open AccessFile23 Citations (Scopus)6 Downloads (Pure) -
2016
Regional heritability mapping method helps explain missing heritability of blood lipid traits in isolated populations
Shirali, M., Pong-Wong, R., Navarro, P., Knott, S., Hayward, C., Vitart, V., Rudan, I., Campbell, H., Hastie, N. D., Wright, A. F. & Haley, C. S., Mar 2016, In: Heredity. 116, p. 333–338Research output: Contribution to journal › Article › peer-review
Open AccessFile16 Citations (Scopus)16 Downloads (Pure) -
2015
A comparison of the sensitivity of the BayesC and genomic best linear unbiased prediction (GBLUP)methods of estimating genomic breeding values under different quantitative trait locus (QTL) model assumptions
Shirali, M., Miraei-Ashtiani, S. R., Pakdel, A., Haley, C. S., Navarro, P. & Pong-Wong, R., 01 Mar 2015, In: Iranian Journal of Applied Animal Science. 5, 1, p. 41-46Research output: Contribution to journal › Article › peer-review