20092019

Research output per year

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Research Output

  • 17 Article
  • 1 Chapter (peer-reviewed)
2019

Effects of metal and metalloid pollutants on the microbiota composition of feces obtained from twelve commercial pig farms across China

Peng, Z., Zhang, J., Fanning, S., Wang, L., Li, M., Maheshwari, N., Sun, J. & Li, F., 10 Jan 2019, In : Science of the Total Environment. 647, p. 577-586

Research output: Contribution to journalArticle

2018

Complete Genomic Analysis of a Salmonella enterica Serovar Typhimurium Isolate Cultured From Ready-to-Eat Pork in China Carrying One Large Plasmid Containing mcr-1

Wang, W., Baloch, Z., Zou, M., Dong, Y., Peng, Z., Hu, Y., Xu, J., Yasmeen, N., Li, F. & Fanning, S., 27 Apr 2018, In : Frontiers in Microbiology. 9, p. 616

Research output: Contribution to journalArticle

Open Access
File
8 Citations (Scopus)
160 Downloads (Pure)

Ram locus is a key regulator to trigger multidrug resistance in Enterobacter aerogenes

Molitor, A., James, C. E., Fanning, S., Pagès, J-M. & Davin-Regli, A., 03 Jan 2018, In : Journal of Medical Microbiology. 67, 2, p. 148-159

Research output: Contribution to journalArticle

2 Citations (Scopus)

Salmonella in breeding pigs: Shedding pattern, transmission of infection and the role of environmental contamination in Irish commercial farrow-to-finish herds

Lynch, H., Walia, K., Leonard, F. C., Lawlor, P. G., Manzanilla, E. G., Grant, J., Duffy, G., Gardiner, G. E., Cormican, M., King, J., Markey, B. K., Fanning, S. & Argüello, H., 12 Jan 2018, In : Zoonoses and Public Health. 65, 1, p. e196-e206

Research output: Contribution to journalArticle

4 Citations (Scopus)
2017

Enterotoxigenicity and Antimicrobial Resistance of Staphylococcus aureus Isolated from Retail Food in China

Wang, W., Baloch, Z., Jiang, T., Zhang, C., Peng, Z., Li, F., Fanning, S., Ma, A. & Xu, J., 21 Nov 2017, In : Frontiers in Microbiology. 8, p. 1-11

Research output: Contribution to journalArticle

Open Access
File
13 Citations (Scopus)
155 Downloads (Pure)
2016

Complete Genome Sequence of Clostridium estertheticum DSM 8809, a Microbe Identified in Spoiled Vacuum Packed Beef

Yu, Z., Gunn, L., Brennan, E., Reid, R., Wall, P. G., Gaora, P. Ó., Hurley, D., Bolton, D. & Fanning, S., 11 Nov 2016, In : Frontiers in Microbiology. 7, p. 1-10

Research output: Contribution to journalArticle

Open Access
File
6 Citations (Scopus)
152 Downloads (Pure)

Correction: Elucidation of the RamA Regulon in Klebsiella pneumoniae Reveals a Role in LPS Regulation

De Majumdar, S., Yu, J., Fookes, M., McAteer, S. P., Llobet, E., Spence, S. F. S., Monaghan, A., Kissenpfennig, A., Ingram, R. J., Bengoechea, J., Gally, D. L., Fanning, S., Elborn, J. S. & Schneiders, T., 11 May 2016, In : PLoS Pathogens. 12, 5, p. e1005649

Research output: Contribution to journalArticle

Open Access
File
174 Downloads (Pure)

Molecular characterization of blaESBL-producing Escherichia coli cultured from pig farms in Ireland

Wang, J., Gibbons, J. F., McGrath, K., Bai, L., Li, F., Leonard, F. C., Stephan, R. & Fanning, S., 25 Jul 2016, In : Journal of Antimicrobial Chemotherapy. 71, 11, p. 3062-3065 dkw278.

Research output: Contribution to journalArticle

9 Citations (Scopus)
2015

Elucidation of the RamA Regulon in Klebsiella pneumoniae Reveals a Role in LPS Regulation

De Majumdar, S., Yu, J., Fookes, M., McAteer, S. P., Llobet, E., Finn, S., Spence, S., Monahan, A., Kissenpfennig, A., Ingram, R. J., Bengoechea, J., Gally, D. L., Fanning, S., Elborn, J. S. & Schneiders, T., Jan 2015, In : PLoS Pathogens. 11, 1, 22 p., e1004627.

Research output: Contribution to journalArticle

Open Access
File
40 Citations (Scopus)
247 Downloads (Pure)

Exposure of Salmonella enterica serovar typhimurium to three humectants used in the food industry induces different osmoadaptation systems

Finn, S., Rogers, L., Händler, K., McClure, P., Amézquita, A., Hinton, J. C. D. & Fanning, S., Oct 2015, In : Applied and Environmental Microbiology. 81, 19, p. 6800-6811 12 p.

Research output: Contribution to journalArticle

Open Access
File
8 Citations (Scopus)
168 Downloads (Pure)

Pathogens in Milk: Enterobacter Species. Reference Module in Food Sciences.

Muensritharam, L., Fanning, S. & Meharg, C., 06 Oct 2015, Reference Module in Food Sciences. Elsevier Inc., p. 1 10 p.

Research output: Chapter in Book/Report/Conference proceedingChapter (peer-reviewed)

2013

Neutral Genomic Microevolution of a Recently Emerged Pathogen, Salmonella enterica Serovar Agona

Zhou, Z., McCann, A., Litrup, E., Murphy, R., Cormican, M., Fanning, S., Brown, D., Guttman, D. S., Brisse, S. & Achtman, M., Apr 2013, In : PLoS Genetics. 9, 4, p. 1-19 19 p., 1003471.

Research output: Contribution to journalArticle

Open Access
File
62 Citations (Scopus)
178 Downloads (Pure)

Pan-genome analysis of the emerging foodborne pathogen Cronobacter spp. suggests a species-level bidirectional divergence driven by niche adaptation

Grim, C. J., Kotewicz, M. L., Power, K. A., Gopinath, G., Franco, A. A., Jarvis, K. G., Yan, Q. Q., Jackson, S. A., Sathyamoorthy, V., Hu, L., Pagotto, F., Iversen, C., Lehner, A., Stephan, R., Fanning, S. & Tall, B. D., 31 May 2013, In : BMC Genomics. 14, 16 p., 366.

Research output: Contribution to journalArticle

Open Access
File
41 Citations (Scopus)
200 Downloads (Pure)

ProP Is Required for the Survival of Desiccated Salmonella enterica Serovar Typimurium Cells on a Stainless Steel Surface

Finn, S., Händler, K., Condell, O., Colgan, A., Cooney, S., McClure, P., Amézquita, A., Hinton, J. C. D. & Fanning, S., Jul 2013, In : Applied and Environmental Microbiology. 79, 14, p. 4376-4384 9 p.

Research output: Contribution to journalArticle

Open Access
File
35 Citations (Scopus)
180 Downloads (Pure)
2012

Complete nucleotide sequence of pVQS1 containing a quinolone resistance determinant from Salmonella enterica serovar Virchow associated with foreign travel

Karczmarczyk, M., Stephan, R., Haechler, H. & Fanning, S., Aug 2012, In : Journal of Antimicrobial Chemotherapy. 67, 8, p. 1861-1864 4 p.

Research output: Contribution to journalArticle

6 Citations (Scopus)

Development and Validation of a PulseNet Standardized Protocol for Subtyping Isolates of Cronobacter Species

Brengi, S. P., O'Brien, S. B., Pichel, M., Iversen, C., Arduino, M., Binsztein, N., Jensen, B., Pagotto, F., Ribot, E. M., Stephan, R., Cernela, N., Cooper, K. & Fanning, S., 01 Sep 2012, In : Foodborne pathogens and disease. 9, 9, p. 861-867 7 p.

Research output: Contribution to journalArticle

21 Citations (Scopus)

Efficacy of Biocides Used in the Modern Food Industry To Control Salmonella enterica, and Links between Biocide Tolerance and Resistance to Clinically Relevant Antimicrobial Compounds

Condell, O., Iversen, C., Cooney, S., Power, K. A., Walsh, C., Burgess, C. & Fanning, S., May 2012, In : Applied and Environmental Microbiology. 78, 9, p. 3087-3097 11 p.

Research output: Contribution to journalArticle

93 Citations (Scopus)
2009

Multiple Regulatory Pathways Associated with High-Level Ciprofloxacin and Multidrug Resistance in Salmonella enterica Serovar Enteritidis: Involvement of ramA and Other Global Regulators

O'Regan, E., Quinn, T., Pagès, J-M., McCusker, M., Piddock, L. & Fanning, S., Mar 2009, In : Antimicrobial Agents and Chemotherapy. 53, 3, p. 1080-1087 8 p.

Research output: Contribution to journalArticle

Open Access
File
79 Citations (Scopus)
271 Downloads (Pure)