20172020

Research output per year

If you made any changes in Pure these will be visible here soon.

Research Output

Filter
Article
2020

NASA GeneLab Platform Utilized for Biological Response to Space Radiation in Animal Models

McDonald, J. T., Stainforth, R., Miller, J., Cahill, T., da Silveira, W. A., Rathi, K. S., Hardiman, G., Taylor, D., Costes, S. V., Chauhan, V., Meller, R. & Beheshti, A., 07 Feb 2020, In : Cancers. 12, 2, 24 p., 381.

Research output: Contribution to journalArticle

Open Access
File
26 Downloads (Pure)

Prominence of IL6, IGF, TLR, and Bioenergetics Pathway Perturbation in Lung Tissues of Scleroderma Patients With Pulmonary Fibrosis

Renaud, L., da Silveira, W. A., Takamura, N., Hardiman, G. & Feghali-Bostwick, C., 10 Mar 2020, In : Frontiers in immunology. 11, 18 p., 383.

Research output: Contribution to journalArticle

Open Access
File
6 Downloads (Pure)
2019

A Human Skin Model Recapitulates Systemic Sclerosis Dermal Fibrosis and Identifies COL22A1 as a TGFβ Early Response Gene that Mediates Fibroblast to Myofibroblast Transition

Watanabe, T., Baker Frost, D., Mlakar, L., Heywood, J., da Silveira, W. A., Hardiman, G. & Feghali-Bostwick, C., 22 Jan 2019, In : Genes. 10, 2

Research output: Contribution to journalArticle

Open Access
File
2 Citations (Scopus)
101 Downloads (Pure)

GAIL: An interactive webserver for inference and dynamic visualization of gene-gene associations based on gene ontology guided mining of biomedical literature

Couch, D., Yu, Z., Nam, J. H., Allen, C., Ramos, P. S., da Silveira, W. A., Hunt, K. J., Hazard, E. S., Hardiman, G., Lawson, A. & Chung, D., 01 Jul 2019, In : PLoS ONE. 14, 7, 19 p., e0219195.

Research output: Contribution to journalArticle

Open Access
File
77 Downloads (Pure)

Gene expression and immunohistochemical analyses identify SOX2 as major risk factor for overall survival and relapse in Ewing sarcoma patients

Sannino, G., Marchetto, A., Ranft, A., Jabar, S., Zacherl, C., Alba-Rubio, R., Stein, S., Wehweck, F. S., Kiran, M. M., Hölting, T. L. B., Musa, J., Romero-Pérez, L., Cidre-Aranaz, F., Knott, M. M. L., Li, J., Jürgens, H., Sastre, A., Alonso, J., Da Silveira, W., Hardiman, G. & 7 others, Gerke, J. S., Orth, M. F., Hartmann, W., Kirchner, T., Ohmura, S., Dirksen, U. & Grünewald, T. G. P., 16 Aug 2019, In : EBioMedicine. 7 p.

Research output: Contribution to journalArticle

Open Access
1 Citation (Scopus)

Mice Exposed to Combined Chronic Low-Dose Irradiation and Modeled Microgravity Develop Long-Term Neurological Sequelae

Overbey, E. G., Paul, A. M., da Silveira, W. A., Tahimic, C. G. T., Reinsch, S. S., Szewczyk, N., Stanbouly, S., Wang, C., Galazka, J. M. & Mao, X. W., 22 Aug 2019, In : International journal of molecular sciences. 20, 17, 16 p., 4094.

Research output: Contribution to journalArticle

Open Access
File
1 Citation (Scopus)
83 Downloads (Pure)

Molecular Profiling of RNA Tumors Using High-Throughput RNA Sequencing: From Raw Data to Systems Level Analyses

da Silveira, W. A., Hazard, E. S., Chung, D. & Hardiman, G., 17 Jan 2019, In : Methods in Molecular Biology . 1908, p. 185-204 20 p.

Research output: Contribution to journalArticle

Open Access
File
2 Citations (Scopus)
66 Downloads (Pure)

Molecular Profiling of RNA Tumors Using High-Throughput RNA Sequencing: Overview of Library Preparation Methods

Courtney, S. M., da Silveira, W. A., Hazard, E. S. & Hardiman, G., 17 Jan 2019, In : Methods in Molecular Biology . 1908, p. 169-184

Research output: Contribution to journalArticle

Multi-omics analysis of multiple missions to space reveal a theme of lipid dysregulation in mouse liver

Beheshti, A., chakravarty, K., Fogle, H., Fazelinia, H., da Silveira, W., Boyko, V., Polo, S-H. L., Saravia-Butler, A. M., Hardiman, G., Taylor, D., Galazka, J. M. & Costes, S. V., 16 Dec 2019, In : Nature Scientific Reports. 9(1), 19195, 12 p., 19195.

Research output: Contribution to journalArticle

Open Access
File
3 Citations (Scopus)
34 Downloads (Pure)

Primary cilia defects causing mitral valve prolapse

Toomer, K. A., Yu, M., Fulmer, D., Guo, L., Moore, K. S., Moore, R., Drayton, K. D., Glover, J., Peterson, N., Ramos-Ortiz, S., Drohan, A., Catching, B. J., Stairley, R., Wessels, A., Lipschutz, J. H., Delling, F. N., Jeunemaitre, X., Dina, C., Collins, R. L., Brand, H. & 24 others, Talkowski, M. E., Del Monte, F., Mukherjee, R., Awgulewitsch, A., Body, S., Hardiman, G., Hazard, E. S., da Silveira, W. A., Wang, B., Leyne, M., Durst, R., Markwald, R. R., Le Scouarnec, S., Hagege, A., Le Tourneau, T., Kohl, P., Rog-Zielinska, E. A., Ellinor, P. T., Levine, R. A., Milan, D. J., Schott, J-J., Bouatia-Naji, N., Slaugenhaupt, S. A. & Norris, R. A., 22 May 2019, In : Science Translational Medicine. 11, 493, 13 p., eaax0290.

Research output: Contribution to journalArticle

Open Access
File
8 Citations (Scopus)
181 Downloads (Pure)

Spaceflight influences gene expression, photoreceptor integrity, and oxidative stress-related damage in the murine retina

Overbey, E. G., da Silveira, W. A., Stanbouly, S., Nishiyama, N. C., Roque-Torres, G. D., Pecaut, M. J., Zawieja, D. C., Wang, C., Willey, J. S., Delp, M. D., Hardiman, G. & Mao, X. W., 16 Sep 2019, In : Scientific Reports. 9, 12 p., 13304.

Research output: Contribution to journalArticle

Open Access
File
4 Citations (Scopus)
91 Downloads (Pure)

Systems analysis of the liver transcriptome in adult male zebrafish exposed to the non-ionic surfactant nonylphenol

Huff, M., da Silveira, W., Starr Hazard, E., Courtney, S. M., Renaud, L. & Hardiman, G., 15 Jan 2019, In : General and Comparative Endocrinology. 271, p. 1-14

Research output: Contribution to journalArticle

Open Access
File
71 Downloads (Pure)

The effects of rosiglitazone on the neonatal rat cardiomyocyte transcriptome: a temporal analysis

da Silveira, W. A., Vazquez-Hidalgo, E., Bartolotta, E., Renaud, L., Paolini, P. & Hardiman, G., 22 Nov 2019, In : Pharmacogenomics. 20, 16, p. 1125-1141 17 p.

Research output: Contribution to journalArticle

2018

Identification of a Subtype of Poorly Differentiated Invasive Ductal Carcinoma of the Breast Based on Vimentin and E-cadherin Expression

Orlandini, L. F., Reis, F. J. C. D., da Silveira, W. A., Tiezzi, M. G., de Andrade, J. M., Ribeiro-Silva, A., Deaton, R., Bosland, M. & Tiezzi, D. G., Dec 2018, In : Revista brasileira de ginecologia e obstetricia : revista da Federacao Brasileira das Sociedades de Ginecologia e Obstetricia. 40, 12, p. 779-786 8 p.

Research output: Contribution to journalArticle

Open Access
File
3 Citations (Scopus)
4 Downloads (Pure)

Interplay Between MicroRNAs and Targeted Genes in Cellular Homeostasis of Adult Zebrafish (Danio rerio)

Renaud, L., da Silveira, W., Glenn Jr., W. B., Hazard, E. S. & Hardiman, G., 01 Aug 2018, In : Current Genomics . 19, 7, p. 615-629 15 p.

Research output: Contribution to journalArticle

1 Citation (Scopus)

miRmapper: A Tool for Interpretation of miRNA–mRNA Interaction Networks

da Silveira, W., Renaud, L., Simpson, J., Glenn Jr., W. B., Hazard, E. S., Chung, D. & Hardiman, G., 14 Sep 2018, In : Genes. 9, 9, 18 p., 458.

Research output: Contribution to journalArticle

Open Access
File
3 Citations (Scopus)
183 Downloads (Pure)

Semi-supervised identification of cancer subgroups using survival outcomes and overlapping grouping information

Wei, W., Sun, Z., da Silveira, W. A., Yu, Z., Lawson, A., Hardiman, G., Kelemen, L. E. & Chung, D., 16 Jan 2018, In : Statistical Methods in Medical Research. p. 1-13

Research output: Contribution to journalArticle

Open Access
File
45 Downloads (Pure)

Systems Analysis of the Liver Transcriptome in Adult Male Zebrafish Exposed to the Plasticizer (2-Ethylhexyl) Phthalate (DEHP)

Huff, M., da Silveira, W., Carnevali, O., Renaud, L. & Hardiman, G., 01 Feb 2018, In : Nature Scientific Reports. 8, 1, p. 1-17 2118.

Research output: Contribution to journalArticle

Open Access
File
14 Citations (Scopus)
173 Downloads (Pure)
2017

Genomics pipelines and data integration: challenges and opportunities in the research setting.

Davis-Turak, J., Courtney, S., Hazard, E. S., Glen. Jr, W. B., da Silveira, W., Wesselman, T., Wolfe, B., Chung, D. & Hardiman, G., 17 Mar 2017, In : Expert review of molecular diagnostics. 17, p. 225 237 p.

Research output: Contribution to journalArticle

22 Citations (Scopus)

Transcription Factor Networks derived from Breast Cancer Stem Cells control the immune response in the Basal subtype

da Silveira, W. A., Palma, P. V. B., Sicchieri, R. D., Villacis, R. A. R., Mandarano, L. R. M., Oliveira, T. M. G., Antonio, H. M. R., de Andrade, J. M., Rogatto, S. R., Theillet, C., du Manoir, S. & Tiezzi, D. G., 06 Jun 2017, In : Nature Scientific Reports. 7, 13 p., 2851.

Research output: Contribution to journalArticle

Open Access
File
6 Citations (Scopus)
59 Downloads (Pure)