Computing integrals for electron molecule scattering on heterogeneous accelerator systems

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Abstract

Using heterogeneous accelerators to obtain high performance for mathematical kernels remains an active research frontier in computational science. The accelerators have compute architectures that are different from the CPUs and in
addition have memory spaces independent of the CPU systems to which they are connected. It follows that accelerators require a different approach to writing optimal code than that needed on a multi CPU system. Taken together these issues have represented a significant barrier to widespread adoption of accelerators for execution with large legacy code bases.

OpenCL has emerged as a common programming language with which to implement code that runs across a range of parallel architectures, including multi-core CPUs. This paper is a case study on how the instruction-level parallelism offered by FPGAs and GPUs through OpenCL can be exploited in molecular physics. The algorithm which we study is the evaluation of tail integrals between Gaussian type basis functions for the R-matrix method, a task that arises in the study of scattering of low energy electrons by molecular targets.

The results of our productivity study, which is the first application of OpenCL in this problem domain, show that significant performance can be obtained from both FPGA and GPU accelerators for this application. We discuss suitable transformations unique to each accelerator architecture for the integrals studied and present performance results comparing the FPGA and GPU with execution on Intel multi-core systems.
Original languageEnglish
Article numbere5984
Number of pages18
JournalConcurrency and Computation: Practice and Experience
Volume33
Issue number5
Early online date24 Sep 2020
DOIs
Publication statusPublished - 10 Mar 2021

Keywords

  • Integrals, heterogeneous accelerator, GPU, FPGA, OpenCL, multi-core CPU

ASJC Scopus subject areas

  • Software
  • Computer Science Applications
  • Atomic and Molecular Physics, and Optics

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