Physical disturbance to ecological niches created by soil structure alters community composition of methanotrophs

Deepak Kumaresan, Nancy Stralis-Pavese, Guy C J Abell, Levente Bodrossy, J Colin Murrell

Research output: Contribution to journalArticlepeer-review

12 Citations (Scopus)

Abstract

Aggregates of different sizes and stability in soil create a composite of ecological niches differing in terms of physico-chemical and structural characteristics. The aim of this study was to identify, using DNA-SIP and mRNA-based microarray analysis, whether shifts in activity and community composition of methanotrophs occur when ecological niches created by soil structure are physically perturbed. Landfill cover soil was subject to three treatments termed: 'control' (minimal structural disruption), 'sieved' (sieved soil using 2mm mesh) and 'ground' (grinding using mortar and pestle). 'Sieved' and 'ground' soil treatments exhibited higher methane oxidation potentials compared with the 'control' soil treatment. Analysis of the active community composition revealed an effect of physical disruption on active methanotrophs. Type I methanotrophs were the most active methanotrophs in 'sieved' and 'ground' soil treatments, whereas both Type I and Type II methanotrophs were active in the 'control' soil treatment. The result emphasize that changes to a particular ecological niche may not result in an immediate change to the active bacterial composition and change in composition will depend on the ability of the bacterial communities to respond to the perturbation.

Original languageEnglish
Pages (from-to)613-621
Number of pages9
JournalENVIRONMENTAL MICROBIOLOGY REPORTS
Volume3
Issue number5
DOIs
Publication statusPublished - Oct 2011
Externally publishedYes

ASJC Scopus subject areas

  • Agricultural and Biological Sciences (miscellaneous)
  • Ecology, Evolution, Behavior and Systematics

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