@inbook{70aa70aeb97645f080cf1ac155e913b7,
title = "Pipeline for integrated microarray expression normalization tool kit (PIMENTo) for tumor microarray profiling experiments",
abstract = "We have developed a Pipeline for Integrated Microarray Expression & Normalization Tool kit (PIMENTo) with the aim of streamlining the processes necessary for gene expression analysis in tumor tissue using DNA microarrays. Built with the R programming language and leveraging several open-source packages available through CRAN and Bioconductor, PIMENTo enables researchers to perform complex tasks with a minimal number of operations. Here, we describe the pipeline, review necessary data inputs, examine data outputs and quality control assessments and explore the commands to perform such analysis.",
keywords = "Genomic profiling, Illumina Bead arrays, Microarrays, Normalization, Quality control, R, Tumor",
author = "Thomas Nash and Matthew Huff and Glen, {W. Bailey} and Gary Hardiman",
year = "2019",
month = jan,
day = "1",
doi = "10.1007/978-1-4939-9004-7_11",
language = "English",
series = "Methods in Molecular Biology",
publisher = "Humana Press Inc.,U.S.",
pages = "153--168",
booktitle = "Methods in Molecular Biology",
}