Sequence and comparative analysis of the chicken genome provide unique perspectives on vertebrate evolution

Ladeana W Hillier; Joan W Miller; E Birney; Wesley C Warren; RC Hardison; CP Ponting; P Bork; D.W. Burt; Martien A M Groenen; ME Delany; JB Dodgson; AT Chinwalla; PF Cliften; SW Clifton; KD Delehaunty; C Fronick; RS Fulton; TA Graves; C Kremitzki; D Layman; Vincent Magrini; JD McPherson; TL Miner; P Minx; WE Nash; MN Nhan; JO Nelson; LG Oddy; CS Pohl; J Randall-Maher; SM Smith; JW Wallis; SP Yang; MN Romanov; CM Rondelli; B Paton; Jacqueline Smith; David Morrice; Lori Daniels; HG Tempest; L. Robertson; JS Masabanda; DK Griffin; A Vignal; V. Fillon; L Jacobbson; S Kerje; L S Andersson; RPM Crooijmans; J Aerts; JJ van der Poel; Hans Ellegren; RB Caldwell; Simon J Hubbard; DV Grafham; AM Kierzek; W. M. McLaren; IM Overton; H Arakawa; KJ Beattie; Y Bezzubov; Paul E Boardman; JK Bonfield; MDR Croning; RM Davies; MD Francis; SJ Humphray; CE Scott; RG Taylor; Cheryll Tickle; WRA Brown; J Rogers; JM Buerstedde; SA Wilson; Lisa Stubbs; Ivan Ovcharenko; Laurie Gordon; Guy S Lucas; MM Miller; H Inoko; T Shiina; Jim Kaufman; J Salomonsen; K Skjoedt; Gane Ka-Shu Wong; J Wang; B Liu; J Wang; J Yu; HM Yang; M Nefedov; M Koriabine; PJ deJong; L Goodstadt; Caleb Webber; N.J. Dickens; Ivica Letunic; M Suyama; D Torrents; Christian von Mering; EM Zdobnov; K Makova; A Nekrutenko; L Elnitski; P Eswara; DC King; S Yang; S Tyekucheva; A Radakrishnan; RS Harris; F Chiaromonte; J Taylor; JB He; M Rijnkels; S Griffiths-Jones; A Ureta-Vidal; MM Hoffman; J Severin; SMJ Searle; A S Law; Jonathon D. Speed; D Waddington; Z Cheng; E Tuzun; Evan E Eichler; ZR Bao; Paul Flicek; DD Shteynberg; MR Brent; JM Bye; EJ Huckle; S Chatterji; C Dewey; L Pachter; A Kouranov; Z Mourelatos; AG Hatzigeorgiou; AH Paterson; R Ivarie; M Brandstrom; E Axelsson; N Backstrom; S Berlin; MT Webster; O Pourquie; A Reymond; C Ucla; Stylianos E Antonarakis; MY Long; JJ Emerson; E Betran; [No Value] Dupanloup; H Kaessmann; AS Hinrichs; G Bejerano; TS Furey; RA Harte; B Raney; A Siepel; WJ Kent; David Haussler; E Eyras; R Castelo; JF Abril; S Castellano; F Camara; Guiomar Nates-Parra; R Guigo; G Bourque; G Tesler; PA Pevzner; H A Smit; LA Fulton; Elaine R Mardis; RK Wilson; International Chicken Genome Sequencing Consortium

doi:10.1038/nature03154

Sequence and comparative analysis of the chicken genome provide unique perspectives on vertebrate evolution

Ladeana W Hillier, Joan W Miller, E Birney, Wesley C Warren, RC Hardison, CP Ponting, P Bork, D.W. Burt, Martien A M Groenen, ME Delany, JB Dodgson, AT Chinwalla, PF Cliften, SW Clifton, KD Delehaunty, C Fronick, RS Fulton, TA Graves, C Kremitzki, D LaymanVincent Magrini, JD McPherson, TL Miner, P Minx, WE Nash, MN Nhan, JO Nelson, LG Oddy, CS Pohl, J Randall-Maher, SM Smith, JW Wallis, SP Yang, MN Romanov, CM Rondelli, B Paton, Jacqueline Smith, David Morrice, Lori Daniels, HG Tempest, L. Robertson, JS Masabanda, DK Griffin, A Vignal, V. Fillon, L Jacobbson, S Kerje, L S Andersson, RPM Crooijmans, J Aerts, JJ van der Poel, Hans Ellegren, RB Caldwell, Simon J Hubbard, DV Grafham, AM Kierzek, W. M. McLaren, IM Overton, H Arakawa, KJ Beattie, Y Bezzubov, Paul E Boardman, JK Bonfield, MDR Croning, RM Davies, MD Francis, SJ Humphray, CE Scott, RG Taylor, Cheryll Tickle, WRA Brown, J Rogers, JM Buerstedde, SA Wilson, Lisa Stubbs, Ivan Ovcharenko, Laurie Gordon, Guy S Lucas, MM Miller, H Inoko, T Shiina, Jim Kaufman, J Salomonsen, K Skjoedt, Gane Ka-Shu Wong, J Wang, B Liu, J Wang, J Yu, HM Yang, M Nefedov, M Koriabine, PJ deJong, L Goodstadt, Caleb Webber, N.J. Dickens, Ivica Letunic, M Suyama, D Torrents, Christian von Mering, EM Zdobnov, K Makova, A Nekrutenko, L Elnitski, P Eswara, DC King, S Yang, S Tyekucheva, A Radakrishnan, RS Harris, F Chiaromonte, J Taylor, JB He, M Rijnkels, S Griffiths-Jones, A Ureta-Vidal, MM Hoffman, J Severin, SMJ Searle, A S Law, Jonathon D. Speed, D Waddington, Z Cheng, E Tuzun, Evan E Eichler, ZR Bao, Paul Flicek, DD Shteynberg, MR Brent, JM Bye, EJ Huckle, S Chatterji, C Dewey, L Pachter, A Kouranov, Z Mourelatos, AG Hatzigeorgiou, AH Paterson, R Ivarie, M Brandstrom, E Axelsson, N Backstrom, S Berlin, MT Webster, O Pourquie, A Reymond, C Ucla, Stylianos E Antonarakis, MY Long, JJ Emerson, E Betran, [No Value] Dupanloup, H Kaessmann, AS Hinrichs, G Bejerano, TS Furey, RA Harte, B Raney, A Siepel, WJ Kent, David Haussler, E Eyras, R Castelo, JF Abril, S Castellano, F Camara, Guiomar Nates-Parra, R Guigo, G Bourque, G Tesler, PA Pevzner, H A Smit, LA Fulton, Elaine R Mardis, RK Wilson, International Chicken Genome Sequencing Consortium

School of Medicine, Dentistry and Biomedical Sciences

Research output: Contribution to journal › Article › peer-review

2324 Citations (Scopus)

Original language	Undefined/Unknown
Pages (from-to)	695-716
Number of pages	22
Journal	Nature
Volume	432
Issue number	7018
DOIs	https://doi.org/10.1038/nature03154
Publication status	Published - 01 Dec 2004

Keywords

NON-LTR RETROTRANSPOSONS, MAJOR HISTOCOMPATIBILITY COMPLEX, RECENT SEGMENTAL DUPLICATIONS, TISSUE-SPECIFIC GENES, BROWN-NORWAY RAT, ALCOHOL-DEHYDROGENASE, MAMMALIAN EVOLUTION, OLFACTORY RECEPTOR, MOUSE GENOME, PHYLOGENETIC ANALYSIS

Access to Document

10.1038/nature03154

Cite this

Hillier, L. W., Miller, J. W., Birney, E., Warren, W. C., Hardison, RC., Ponting, CP., Bork, P., Burt, D. W., Groenen, M. A. M., Delany, ME., Dodgson, JB., Chinwalla, AT., Cliften, PF., Clifton, SW., Delehaunty, KD., Fronick, C., Fulton, RS., Graves, TA., Kremitzki, C., ... Consortium, I. C. G. S. (2004). Sequence and comparative analysis of the chicken genome provide unique perspectives on vertebrate evolution. Nature, 432(7018), 695-716. https://doi.org/10.1038/nature03154

@article{6cd774d8fccd42e49da400ea9003f93f,

title = "Sequence and comparative analysis of the chicken genome provide unique perspectives on vertebrate evolution",

keywords = "NON-LTR RETROTRANSPOSONS, MAJOR HISTOCOMPATIBILITY COMPLEX, RECENT SEGMENTAL DUPLICATIONS, TISSUE-SPECIFIC GENES, BROWN-NORWAY RAT, ALCOHOL-DEHYDROGENASE, MAMMALIAN EVOLUTION, OLFACTORY RECEPTOR, MOUSE GENOME, PHYLOGENETIC ANALYSIS",

author = "Hillier, \{Ladeana W\} and Miller, \{Joan W\} and E Birney and Warren, \{Wesley C\} and RC Hardison and CP Ponting and P Bork and D.W. Burt and Groenen, \{Martien A M\} and ME Delany and JB Dodgson and AT Chinwalla and PF Cliften and SW Clifton and KD Delehaunty and C Fronick and RS Fulton and TA Graves and C Kremitzki and D Layman and Vincent Magrini and JD McPherson and TL Miner and P Minx and WE Nash and MN Nhan and JO Nelson and LG Oddy and CS Pohl and J Randall-Maher and SM Smith and JW Wallis and SP Yang and MN Romanov and CM Rondelli and B Paton and Jacqueline Smith and David Morrice and Lori Daniels and HG Tempest and L. Robertson and JS Masabanda and DK Griffin and A Vignal and V. Fillon and L Jacobbson and S Kerje and Andersson, \{L S\} and RPM Crooijmans and J Aerts and \{van der Poel\}, JJ and Hans Ellegren and RB Caldwell and Hubbard, \{Simon J\} and DV Grafham and AM Kierzek and McLaren, \{W. M.\} and IM Overton and H Arakawa and KJ Beattie and Y Bezzubov and Boardman, \{Paul E\} and JK Bonfield and MDR Croning and RM Davies and MD Francis and SJ Humphray and CE Scott and RG Taylor and Cheryll Tickle and WRA Brown and J Rogers and JM Buerstedde and SA Wilson and Lisa Stubbs and Ivan Ovcharenko and Laurie Gordon and Lucas, \{Guy S\} and MM Miller and H Inoko and T Shiina and Jim Kaufman and J Salomonsen and K Skjoedt and Wong, \{Gane Ka-Shu\} and J Wang and B Liu and J Wang and J Yu and HM Yang and M Nefedov and M Koriabine and PJ deJong and L Goodstadt and Caleb Webber and N.J. Dickens and Ivica Letunic and M Suyama and D Torrents and \{von Mering\}, Christian and EM Zdobnov and K Makova and A Nekrutenko and L Elnitski and P Eswara and DC King and S Yang and S Tyekucheva and A Radakrishnan and RS Harris and F Chiaromonte and J Taylor and JB He and M Rijnkels and S Griffiths-Jones and A Ureta-Vidal and MM Hoffman and J Severin and SMJ Searle and Law, \{A S\} and Speed, \{Jonathon D.\} and D Waddington and Z Cheng and E Tuzun and Eichler, \{Evan E\} and ZR Bao and Paul Flicek and DD Shteynberg and MR Brent and JM Bye and EJ Huckle and S Chatterji and C Dewey and L Pachter and A Kouranov and Z Mourelatos and AG Hatzigeorgiou and AH Paterson and R Ivarie and M Brandstrom and E Axelsson and N Backstrom and S Berlin and MT Webster and O Pourquie and A Reymond and C Ucla and Antonarakis, \{Stylianos E\} and MY Long and JJ Emerson and E Betran and Dupanloup, \{[No Value]\} and H Kaessmann and AS Hinrichs and G Bejerano and TS Furey and RA Harte and B Raney and A Siepel and WJ Kent and David Haussler and E Eyras and R Castelo and JF Abril and S Castellano and F Camara and Guiomar Nates-Parra and R Guigo and G Bourque and G Tesler and PA Pevzner and Smit, \{H A\} and LA Fulton and Mardis, \{Elaine R\} and RK Wilson and Consortium, \{International Chicken Genome Sequencing\}",

year = "2004",

month = dec,

day = "1",

doi = "10.1038/nature03154",

language = "Undefined/Unknown",

volume = "432",

pages = "695--716",

journal = "Nature",

issn = "0028-0836",

publisher = "Nature Research",

number = "7018",

}

Hillier, LW, Miller, JW, Birney, E, Warren, WC, Hardison, RC, Ponting, CP, Bork, P, Burt, DW, Groenen, MAM, Delany, ME, Dodgson, JB, Chinwalla, AT, Cliften, PF, Clifton, SW, Delehaunty, KD, Fronick, C, Fulton, RS, Graves, TA, Kremitzki, C, Layman, D, Magrini, V, McPherson, JD, Miner, TL, Minx, P, Nash, WE, Nhan, MN, Nelson, JO, Oddy, LG, Pohl, CS, Randall-Maher, J, Smith, SM, Wallis, JW, Yang, SP, Romanov, MN, Rondelli, CM, Paton, B, Smith, J, Morrice, D, Daniels, L, Tempest, HG, Robertson, L, Masabanda, JS, Griffin, DK, Vignal, A, Fillon, V, Jacobbson, L, Kerje, S, Andersson, LS, Crooijmans, RPM, Aerts, J, van der Poel, JJ, Ellegren, H, Caldwell, RB, Hubbard, SJ, Grafham, DV, Kierzek, AM, McLaren, WM, Overton, IM, Arakawa, H, Beattie, KJ, Bezzubov, Y, Boardman, PE, Bonfield, JK, Croning, MDR, Davies, RM, Francis, MD, Humphray, SJ, Scott, CE, Taylor, RG, Tickle, C, Brown, WRA, Rogers, J, Buerstedde, JM, Wilson, SA, Stubbs, L, Ovcharenko, I, Gordon, L, Lucas, GS, Miller, MM, Inoko, H, Shiina, T, Kaufman, J, Salomonsen, J, Skjoedt, K, Wong, GK-S, Wang, J, Liu, B, Wang, J, Yu, J, Yang, HM, Nefedov, M, Koriabine, M, deJong, PJ, Goodstadt, L, Webber, C, Dickens, NJ, Letunic, I, Suyama, M, Torrents, D, von Mering, C, Zdobnov, EM, Makova, K, Nekrutenko, A, Elnitski, L, Eswara, P, King, DC, Yang, S, Tyekucheva, S, Radakrishnan, A, Harris, RS, Chiaromonte, F, Taylor, J, He, JB, Rijnkels, M, Griffiths-Jones, S, Ureta-Vidal, A, Hoffman, MM, Severin, J, Searle, SMJ, Law, AS, Speed, JD, Waddington, D, Cheng, Z, Tuzun, E, Eichler, EE, Bao, ZR, Flicek, P, Shteynberg, DD, Brent, MR, Bye, JM, Huckle, EJ, Chatterji, S, Dewey, C, Pachter, L, Kouranov, A, Mourelatos, Z, Hatzigeorgiou, AG, Paterson, AH, Ivarie, R, Brandstrom, M, Axelsson, E, Backstrom, N, Berlin, S, Webster, MT, Pourquie, O, Reymond, A, Ucla, C, Antonarakis, SE, Long, MY, Emerson, JJ, Betran, E, Dupanloup, NV, Kaessmann, H, Hinrichs, AS, Bejerano, G, Furey, TS, Harte, RA, Raney, B, Siepel, A, Kent, WJ, Haussler, D, Eyras, E, Castelo, R, Abril, JF, Castellano, S, Camara, F, Nates-Parra, G, Guigo, R, Bourque, G, Tesler, G, Pevzner, PA, Smit, HA, Fulton, LA, Mardis, ER, Wilson, RK & Consortium, ICGS 2004, 'Sequence and comparative analysis of the chicken genome provide unique perspectives on vertebrate evolution', Nature, vol. 432, no. 7018, pp. 695-716. https://doi.org/10.1038/nature03154

TY - JOUR

T1 - Sequence and comparative analysis of the chicken genome provide unique perspectives on vertebrate evolution

AU - Hillier, Ladeana W

AU - Miller, Joan W

AU - Birney, E

AU - Warren, Wesley C

AU - Hardison, RC

AU - Ponting, CP

AU - Bork, P

AU - Burt, D.W.

AU - Groenen, Martien A M

AU - Delany, ME

AU - Dodgson, JB

AU - Chinwalla, AT

AU - Cliften, PF

AU - Clifton, SW

AU - Delehaunty, KD

AU - Fronick, C

AU - Fulton, RS

AU - Graves, TA

AU - Kremitzki, C

AU - Layman, D

AU - Magrini, Vincent

AU - McPherson, JD

AU - Miner, TL

AU - Minx, P

AU - Nash, WE

AU - Nhan, MN

AU - Nelson, JO

AU - Oddy, LG

AU - Pohl, CS

AU - Randall-Maher, J

AU - Smith, SM

AU - Wallis, JW

AU - Yang, SP

AU - Romanov, MN

AU - Rondelli, CM

AU - Paton, B

AU - Smith, Jacqueline

AU - Morrice, David

AU - Daniels, Lori

AU - Tempest, HG

AU - Robertson, L.

AU - Masabanda, JS

AU - Griffin, DK

AU - Vignal, A

AU - Fillon, V.

AU - Jacobbson, L

AU - Kerje, S

AU - Andersson, L S

AU - Crooijmans, RPM

AU - Aerts, J

AU - van der Poel, JJ

AU - Ellegren, Hans

AU - Caldwell, RB

AU - Hubbard, Simon J

AU - Grafham, DV

AU - Kierzek, AM

AU - McLaren, W. M.

AU - Overton, IM

AU - Arakawa, H

AU - Beattie, KJ

AU - Bezzubov, Y

AU - Boardman, Paul E

AU - Bonfield, JK

AU - Croning, MDR

AU - Davies, RM

AU - Francis, MD

AU - Humphray, SJ

AU - Scott, CE

AU - Taylor, RG

AU - Tickle, Cheryll

AU - Brown, WRA

AU - Rogers, J

AU - Buerstedde, JM

AU - Wilson, SA

AU - Stubbs, Lisa

AU - Ovcharenko, Ivan

AU - Gordon, Laurie

AU - Lucas, Guy S

AU - Miller, MM

AU - Inoko, H

AU - Shiina, T

AU - Kaufman, Jim

AU - Salomonsen, J

AU - Skjoedt, K

AU - Wong, Gane Ka-Shu

AU - Wang, J

AU - Liu, B

AU - Wang, J

AU - Yu, J

AU - Yang, HM

AU - Nefedov, M

AU - Koriabine, M

AU - deJong, PJ

AU - Goodstadt, L

AU - Webber, Caleb

AU - Dickens, N.J.

AU - Letunic, Ivica

AU - Suyama, M

AU - Torrents, D

AU - von Mering, Christian

AU - Zdobnov, EM

AU - Makova, K

AU - Nekrutenko, A

AU - Elnitski, L

AU - Eswara, P

AU - King, DC

AU - Yang, S

AU - Tyekucheva, S

AU - Radakrishnan, A

AU - Harris, RS

AU - Chiaromonte, F

AU - Taylor, J

AU - He, JB

AU - Rijnkels, M

AU - Griffiths-Jones, S

AU - Ureta-Vidal, A

AU - Hoffman, MM

AU - Severin, J

AU - Searle, SMJ

AU - Law, A S

AU - Speed, Jonathon D.

AU - Waddington, D

AU - Cheng, Z

AU - Tuzun, E

AU - Eichler, Evan E

AU - Bao, ZR

AU - Flicek, Paul

AU - Shteynberg, DD

AU - Brent, MR

AU - Bye, JM

AU - Huckle, EJ

AU - Chatterji, S

AU - Dewey, C

AU - Pachter, L

AU - Kouranov, A

AU - Mourelatos, Z

AU - Hatzigeorgiou, AG

AU - Paterson, AH

AU - Ivarie, R

AU - Brandstrom, M

AU - Axelsson, E

AU - Backstrom, N

AU - Berlin, S

AU - Webster, MT

AU - Pourquie, O

AU - Reymond, A

AU - Ucla, C

AU - Antonarakis, Stylianos E

AU - Long, MY

AU - Emerson, JJ

AU - Betran, E

AU - Dupanloup, [No Value]

AU - Kaessmann, H

AU - Hinrichs, AS

AU - Bejerano, G

AU - Furey, TS

AU - Harte, RA

AU - Raney, B

AU - Siepel, A

AU - Kent, WJ

AU - Haussler, David

AU - Eyras, E

AU - Castelo, R

AU - Abril, JF

AU - Castellano, S

AU - Camara, F

AU - Nates-Parra, Guiomar

AU - Guigo, R

AU - Bourque, G

AU - Tesler, G

AU - Pevzner, PA

AU - Smit, H A

AU - Fulton, LA

AU - Mardis, Elaine R

AU - Wilson, RK

AU - Consortium, International Chicken Genome Sequencing

PY - 2004/12/1

Y1 - 2004/12/1

KW - NON-LTR RETROTRANSPOSONS, MAJOR HISTOCOMPATIBILITY COMPLEX, RECENT SEGMENTAL DUPLICATIONS, TISSUE-SPECIFIC GENES, BROWN-NORWAY RAT, ALCOHOL-DEHYDROGENASE, MAMMALIAN EVOLUTION, OLFACTORY RECEPTOR, MOUSE GENOME, PHYLOGENETIC ANALYSIS

U2 - 10.1038/nature03154

DO - 10.1038/nature03154

M3 - Article

SN - 0028-0836

VL - 432

SP - 695

EP - 716

JO - Nature

JF - Nature

IS - 7018

ER -