Yersinia canariae sp. Nov., isolated from a human yersiniosis case

Scott V. Nguyen; David R. Greig; Daniel Hurley; Orla Donoghue; Yu Cao; Evonne McCabe; Molly Mitchell; Kirsten Schaffer; Claire Jenkins; Séamus Fanning

doi:10.1099/ijsem.0.004047

Yersinia canariae sp. Nov., isolated from a human yersiniosis case

Scott V. Nguyen^*, David R. Greig, Daniel Hurley, Orla Donoghue, Yu Cao, Evonne McCabe, Molly Mitchell, Kirsten Schaffer, Claire Jenkins, Séamus Fanning

^*Corresponding author for this work

Research output: Contribution to journal › Article › peer-review

4 Citations (Scopus)

Abstract

A Gram-negative rod from the Yersinia genus was isolated from a clinical case of yersiniosis in the United Kingdom. Long read sequencing data from an Oxford Nanopore Technologies (ONT) MinION in conjunction with Illumina HiSeq reads were used to generate a finished quality genome of this strain. Overall Genome Related Index (OGRI) of the strain was used to determine that it was a novel species within Yersinia, despite biochemical similarities to Yersinia enterocolitica. The 16S ribosomal RNA gene accessions are MN434982-MN434987 and the accession number for the complete and closed chro-mosome is CP043727. The type strain is SRR7544370^T (=NCTC 14382^T /=LMG 31573^T).

Original language	English
Pages (from-to)	2382-2387
Number of pages	6
Journal	International Journal of Systematic and Evolutionary Microbiology
Volume	70
Issue number	4
DOIs	https://doi.org/10.1099/ijsem.0.004047
Publication status	Published - 11 Mar 2020

Bibliographical note

Publisher Copyright:
© 2020 Crown copyright.

Keywords

MinION
Oxford Nanopore Technologies
Taxonomy
Whole genome sequencing
Yersinia canariae
Yersiniosis

ASJC Scopus subject areas

Microbiology
Ecology, Evolution, Behavior and Systematics

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Cite this

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title = "Yersinia canariae sp. Nov., isolated from a human yersiniosis case",

abstract = "A Gram-negative rod from the Yersinia genus was isolated from a clinical case of yersiniosis in the United Kingdom. Long read sequencing data from an Oxford Nanopore Technologies (ONT) MinION in conjunction with Illumina HiSeq reads were used to generate a finished quality genome of this strain. Overall Genome Related Index (OGRI) of the strain was used to determine that it was a novel species within Yersinia, despite biochemical similarities to Yersinia enterocolitica. The 16S ribosomal RNA gene accessions are MN434982-MN434987 and the accession number for the complete and closed chro-mosome is CP043727. The type strain is SRR7544370T (=NCTC 14382T /=LMG 31573T).",

keywords = "MinION, Oxford Nanopore Technologies, Taxonomy, Whole genome sequencing, Yersinia canariae, Yersiniosis",

author = "Nguyen, {Scott V.} and Greig, {David R.} and Daniel Hurley and Orla Donoghue and Yu Cao and Evonne McCabe and Molly Mitchell and Kirsten Schaffer and Claire Jenkins and S{\'e}amus Fanning",

note = "Publisher Copyright: {\textcopyright} 2020 Crown copyright.",

year = "2020",

month = mar,

day = "11",

doi = "10.1099/ijsem.0.004047",

language = "English",

volume = "70",

pages = "2382--2387",

journal = "International Journal of Systematic and Evolutionary Microbiology",

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T1 - Yersinia canariae sp. Nov., isolated from a human yersiniosis case

AU - Nguyen, Scott V.

AU - Greig, David R.

AU - Hurley, Daniel

AU - Donoghue, Orla

AU - Cao, Yu

AU - McCabe, Evonne

AU - Mitchell, Molly

AU - Schaffer, Kirsten

AU - Jenkins, Claire

AU - Fanning, Séamus

PY - 2020/3/11

Y1 - 2020/3/11

N2 - A Gram-negative rod from the Yersinia genus was isolated from a clinical case of yersiniosis in the United Kingdom. Long read sequencing data from an Oxford Nanopore Technologies (ONT) MinION in conjunction with Illumina HiSeq reads were used to generate a finished quality genome of this strain. Overall Genome Related Index (OGRI) of the strain was used to determine that it was a novel species within Yersinia, despite biochemical similarities to Yersinia enterocolitica. The 16S ribosomal RNA gene accessions are MN434982-MN434987 and the accession number for the complete and closed chro-mosome is CP043727. The type strain is SRR7544370T (=NCTC 14382T /=LMG 31573T).

AB - A Gram-negative rod from the Yersinia genus was isolated from a clinical case of yersiniosis in the United Kingdom. Long read sequencing data from an Oxford Nanopore Technologies (ONT) MinION in conjunction with Illumina HiSeq reads were used to generate a finished quality genome of this strain. Overall Genome Related Index (OGRI) of the strain was used to determine that it was a novel species within Yersinia, despite biochemical similarities to Yersinia enterocolitica. The 16S ribosomal RNA gene accessions are MN434982-MN434987 and the accession number for the complete and closed chro-mosome is CP043727. The type strain is SRR7544370T (=NCTC 14382T /=LMG 31573T).

KW - MinION

KW - Oxford Nanopore Technologies

KW - Taxonomy

KW - Whole genome sequencing

KW - Yersinia canariae

KW - Yersiniosis

U2 - 10.1099/ijsem.0.004047

DO - 10.1099/ijsem.0.004047

M3 - Article

C2 - 32160143

AN - SCOPUS:85084975185

VL - 70

SP - 2382

EP - 2387

JO - International Journal of Systematic and Evolutionary Microbiology

JF - International Journal of Systematic and Evolutionary Microbiology

SN - 1466-5026

IS - 4

ER -

Yersinia canariae sp. Nov., isolated from a human yersiniosis case

Abstract

Bibliographical note

Keywords

ASJC Scopus subject areas

Access to Document

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Cite this